Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01843 ATGGTTTTTTTCTTCAATAGGGTCAACTTGTTCATCTTTTTTCATCTCCTTGTTGCAACACCCATCTTCCCAGAATCCTCCTTCAGCTCAAATGCAATCTCCACCACCAAGTTCTTAGATTTAGCCAAGGATCCTCGGCTTTTTGATTGGATGGTGGGTATCAGAAGGAAGATTCACGAGAACCCAGAGCTGGGTTATGAGGAATTTGAGACCAGTCAGCTCATAAGAGTGGAATTGGATAAATTGGGCATCTCATATAAATACCCAGTTGCAGTCACTGGTGTTATTGGCTTCATAGGGACTGGACTCCCTCCTTTTGTTGCATTAAGAGCTGATATGGATGCTCTTCCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCTTGTGGTCATGATGCTCATGTCGCCATGCTTCTCGGTGCGGCAAAGATCCTCAAAGAGCATGAAAATGAGATTCGAGGAACTGTTGTTCTTGTTTTTCAACCAGCCGAAGAAGGAGGTGCAGGGGCTAGGAAAATTTTAGATGCTGGAGTCTTGGAAAATATCTCTGCCATATTTGGTTTGCATATTACTCCTACCTTTCCTATTGGTGAAGTTGGCAGTAGGGCGGGTCCTATATTTGCTGGAAGCGGCTTCTTTGAAGCAACAATTAATGGCAGGGGAGGTCATGCAGCTATCCCTCAGCACTCTATAGACCCAATATTGGCAGCTTCCAATGTGATTGTTAGCTTACAGCATATTGTATCTCGTGAGGCCAATCCTCTGGACTCCCAGGTTGTGACTGTAGGAAAATTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACAATTGGTGGCACTTTCCGAGCTTTTTCGAGAGAAAGCTTTATGCAGCTGAGACATCGGATTGAGCAGGTTATCACTGGGCAAGCTGCTGTGCAGAGATGCAATGCAACGGTCAACTTTCTTGACGAAGAGAAACCTTTCTTCCCTCCTACAGTGAACAATGGTGACTTGCATGAGTTCTTTCAAAGTGTTGCTGGGAGTTTAATTGGAGGCGATAAAGTTAAGGACTTGCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCAGGATACTTCTTCCTCCTTGGAATGGAGGATGCCTCTGTTGAGCGTCTTGAGTTACCACACTCTCCATATTACAAAATCAATGAAGATGTACTTCCTTATGGAGCTGCACTTCATGCATCATTAGCAACTAGGTATCTTCTCAAATTAAATCAAGACTTACCAGTAGTGGAGAGGAAGCATCATGATGAATTATAG 1335 0.439 MVFFFNRVNLFIFFHLLVATPIFPESSFSSNAISTTKFLDLAKDPRLFDWMVGIRRKIHENPELGYEEFETSQLIRVELDKLGISYKYPVAVTGVIGFIGTGLPPFVALRADMDALPMQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKEHENEIRGTVVLVFQPAEEGGAGARKILDAGVLENISAIFGLHITPTFPIGEVGSRAGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREANPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSRESFMQLRHRIEQVITGQAAVQRCNATVNFLDEEKPFFPPTVNNGDLHEFFQSVAGSLIGGDKVKDLQPLMGSEDFAFYQEVFPGYFFLLGMEDASVERLELPHSPYYKINEDVLPYGAALHASLATRYLLKLNQDLPVVERKHHDEL 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01843 444 FunFam N-acetyldiaminopimelate deacetylase 216 334 - -
Phco10g01843 444 Gene3D - 216 334 - -
Phco10g01843 444 PANTHER PEPTIDASE M20 FAMILY MEMBER 26 431 IPR017439 GO:0016787
Phco10g01843 444 SUPERFAMILY Zn-dependent exopeptidases 46 427 - -
Phco10g01843 444 CDD M20_IAA_Hyd 51 426 IPR044757 GO:0009850|GO:0016787
Phco10g01843 444 Pfam Peptidase family M20/M25/M40 108 422 IPR002933 GO:0016787
Phco10g01843 444 Pfam Peptidase dimerisation domain 217 314 IPR011650 -
Phco10g01843 444 NCBIfam amidohydrolase 51 413 IPR017439 GO:0016787
Phco10g01843 444 Gene3D Zn peptidases 51 411 - -
Phco10g01843 444 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Phco10g01843 444 PIRSF Amidohydrol_AmhX 37 430 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01843 Phco-Chr10 40636425 40639914 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01843 10 40636425 40639914 Phco1g00268 1 1926827 1929685 PCT