Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00246 ATGGGAAAAGCTAGCAGGTGGTTCAAGGGTTTGTTGGGGATGAAGAAGGAGAAGGACCACAGCGACAATTCAGGCTCACTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTGCTAAGCCAGGGAAGGATGTGCCATCTTCAGTTCCTGCCACAGATAACACCTGGCTCAGATCCTACTTTGATGATACAGAGACTGAGCAGAATAAGCATGCAATTGCTGTTGCCGCCGCCACTGCGGCTGCCGCCGATGCTGCCATGGTTGCTGCACAGGCTGCTGTGGCCGTTGTGAGGCTGACAAGCCAGGGTAGAGGTGCATTGTTCAGTGGAAGCAGGGAGAAGTGGGCTGCTGTGAAGATCCAAACTTTTTTTAGAGGCTACTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAGGCTCTTGTTAGAGGGTACTTGGTTAGAAAGAGGGCTGCTGCAACTCTTCACAGTATGCAAGCTTTAATAAGAGCTCAAACTGCTGTCAGATCACAGCGAGCTCGTCGTTCCTTGAGCAAAGAAAGCAGATTTCTACCTGAAGTTCTTGCAAGAAAATCTGTGGAACGATTTGATGAAACAAGGAGTGAATTCCACAGTAAAAGATTACCTACATCTTATGAAACATCCTTGAATGGTTTTGATGAGAGTCCCAAGATTGTTGAAATTGATACATACAAGACTCGATCAAGGTCTAGGCGCTTTACCTCTACAATGTCTGAGTGTGGAGAAGACATGTCCTGTCAGGCAATGTCGTCCCCTCTTCCTTGTCATGTCCCTGGTCGAACCTCCGTTCCTGATTGCAGACACCTTCAAGATTTTGATTGGTACCTCAATGTTGATGAGTGTAGATTCTCCACTGCTCATAGCACACCACGTTTCACAAACTATGCCCGGCCTAATGCTCCAGCTACACCAGCCAAAAGTGTTTGTGGAGATACCTTCTTCAGACCTTGCTCCAATTTTCCCAACTACATGACCAATACTCAGTCATTCAAGGCAAAACTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAACCCAAGAAAAGACTCTCACTGAATGAAGTGATGGCTGCAAGGAACAGTATAAGTAGTGTTAGAATGCAAAGACCATCATCAAATTTCTTCCAGACTCAAGAATCCTGGAATTTTTGA 1188 0.4621 MGKASRWFKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFAKPGKDVPSSVPATDNTWLRSYFDDTETEQNKHAIAVAAATAAAADAAMVAAQAAVAVVRLTSQGRGALFSGSREKWAAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQTAVRSQRARRSLSKESRFLPEVLARKSVERFDETRSEFHSKRLPTSYETSLNGFDESPKIVEIDTYKTRSRSRRFTSTMSECGEDMSCQAMSSPLPCHVPGRTSVPDCRHLQDFDWYLNVDECRFSTAHSTPRFTNYARPNAPATPAKSVCGDTFFRPCSNFPNYMTNTQSFKAKLRSHSAPKQRPEPKKRLSLNEVMAARNSISSVRMQRPSSNFFQTQESWNF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00246 395 Pfam IQ calmodulin-binding motif 141 155 IPR000048 GO:0005515
Phco1g00246 395 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Phco1g00246 395 SMART iq_5 113 135 IPR000048 GO:0005515
Phco1g00246 395 SMART iq_5 136 157 IPR000048 GO:0005515
Phco1g00246 395 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Phco1g00246 395 Pfam Protein of unknown function (DUF4005) 302 377 IPR025064 -
Phco1g00246 395 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Phco1g00246 395 PANTHER IQ-DOMAIN 5-RELATED 1 365 - -
Phco1g00246 395 Gene3D - 57 139 - -
Phco1g00246 395 MobiDBLite consensus disorder prediction 1 51 - -
Phco1g00246 395 MobiDBLite consensus disorder prediction 10 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00246 Phco-Chr1 1738911 1740679 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00246 1 1738911 1740679 Phco1g00246 1 1738911 1740679 ECH
Phco10g01862 10 40802946 40804393 Phco1g00246 1 1738911 1740679 PCT