Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00227 ATGGAAAACAATTCAGCAGTGATTGCAAAGAGAGTGTGGAAGATAATACGTGTGGCCTTCTTCATGTTGAGAAAAGGCATATCAAAGGGCAAGCTAATGATGCACCTTAACGTCATGCTCAAACGCCGTAGCAAACTCGCCGGAAAGGCCATCACCAACCTCATGTTCCACCACCCCCACCATGTCGGAGTCCCCGACAACGACCTCCAGTTCTCAGCCGCCAGGGAGTACGAGTTCAGCTGCAGCAACACCCCCAACAACTTCTTTGCCACCATTGGCAACAGCAGCAAGCGCCACCGCCACAACCCTTTCTTCACGTGCGCTCACGCGCCGCCCACTTTCGAGGACGACGCCGTGACCGTCAATGTCGTGAAGGGCGTGTTGGAGATGCTGAACAAGGAGGCGGCGGTGGAGGCGTCGCCGGCCGCCGCACTTTGTAGCCCTGTGGTGAGGCAGCTTAGGGTTACGGACTCTCCGTTCCCACTTCGTGAGTACGAGGATGACAAGGACAACCAAGTGGACAAGGCTGCGGACGAGTTCATAAAGAGGTTTTACAAAGAGTTGAAGAAGCAAACTTGA 579 0.5458 MENNSAVIAKRVWKIIRVAFFMLRKGISKGKLMMHLNVMLKRRSKLAGKAITNLMFHHPHHVGVPDNDLQFSAAREYEFSCSNTPNNFFATIGNSSKRHRHNPFFTCAHAPPTFEDDAVTVNVVKGVLEMLNKEAAVEASPAAALCSPVVRQLRVTDSPFPLREYEDDKDNQVDKAADEFIKRFYKELKKQT 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00227 192 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 5 191 - -
Phco1g00227 192 Pfam Cotton fibre expressed protein 170 191 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00227 Phco-Chr1 1599646 1600224 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00227 1 1599646 1600224 Phco10g01875 10 40936970 40937551 ECH
Phco4g03512 4 55204363 55204962 Phco1g00227 1 1599646 1600224 ECH
Phco5g00099 5 737003 737575 Phco1g00227 1 1599646 1600224 ECH
Phco1g00227 1 1599646 1600224 Phco1g00227 1 1599646 1600224 ECH
Phco10g01875 10 40936970 40937551 Phco1g00227 1 1599646 1600224 PCT