Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00170 ATGGAGTTGATTTCGGGTCTACCAGAGGATGTAGCACGGGACTGTCTCATTCGGGTTTCGTACCAGCAGTTCCCCACGGTGGCGTCAGTGTGCAAGCTCTGGAAGTCGGAGATTCTTTCGCCGGAGTACCACCGGCAACGGCGTAGCACGAAGCACGCGCAGAAGCTCATAGCGATGGTTCAGGCTCGCGACGAGCCAGGAACTGGTTCGACCAAGCGAATGACGAACCCGGTTTACCGTCTCAGCGTGTTCGAACCGGAAACGGGTCACTGGGCCGAGCTGCCACCACCGCCGGAGTTTTGTTCCGGGTTACCTATGTTCTGTCAGTTAGTGAGTGTCGGGTACGATCTTGTCGTGTTGGGCGGGTTGGACCCGAATTCGTGGAAAGCATCGAGTTCTGTGTTTGTGTACAATTTCTTGTCGGCGAAGTGGCGCCGCGCCGCGGACATGCCGGGTGGGCCACGCACGTTTTTCGCTTGCGCGTCGGATTCTAAAGGGACGGTTTTTGTCGCCGGAGGACACGATAACGAGAAGAACGCGCTGCGTTCGGCTATGGTCTATGATGTTGCCTCGGACCGGTGGGTCTCGCTTCCCGACATGGCGGCGGAGCGCGACGAGTGCAAGGGCGTTTTCCGTGGCGGGAGGTTCGTCGTGGTCGGGGGCTACCCGACGGAGACGCAGGGAAGGTTCCGGAAGAGCGCGGAGGCGTTTGATCCTGCCACGTTGCGCTGGGGCGAAGTGAAAGAAGACTTTCTGGATTGCGCCTCGTGTCCGAGGACGTTTGTGAACGGTGGAGATGGCGAGGCGGTGTTTTTGTGCAGTGGAGGGGACTTGATCTCGCGTCGAGGCGACACGTGGCAGAAGATGTCGACGGTGCCGGGGGATATACGCAACGTGGCGTACGTTGGGGCGTTTGATAGGACGCTGGTGTTGATTGGATCCAGCGGCTACGGTCAAGTCCACGTGGCTTTTGCTTTCGATTTTGAGAGTTGCAAATGGAGGAAACTGGCAAGCCCAGAGGGGTTCATGGGCCATGTCCAAACCGGCTGTGTTTTAGAGATTTAG 1065 0.5831 MELISGLPEDVARDCLIRVSYQQFPTVASVCKLWKSEILSPEYHRQRRSTKHAQKLIAMVQARDEPGTGSTKRMTNPVYRLSVFEPETGHWAELPPPPEFCSGLPMFCQLVSVGYDLVVLGGLDPNSWKASSSVFVYNFLSAKWRRAADMPGGPRTFFACASDSKGTVFVAGGHDNEKNALRSAMVYDVASDRWVSLPDMAAERDECKGVFRGGRFVVVGGYPTETQGRFRKSAEAFDPATLRWGEVKEDFLDCASCPRTFVNGGDGEAVFLCSGGDLISRRGDTWQKMSTVPGDIRNVAYVGAFDRTLVLIGSSGYGQVHVAFAFDFESCKWRKLASPEGFMGHVQTGCVLEI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00170 354 Gene3D - 52 346 IPR015915 GO:0005515
Phco1g00170 354 PANTHER OS02G0208700 PROTEIN 2 354 IPR044595 GO:0080037|GO:2000762
Phco1g00170 354 CDD F-box_AtAFR-like 3 47 - -
Phco1g00170 354 SMART kelc_smart 116 164 IPR006652 GO:0005515
Phco1g00170 354 SMART kelc_smart 167 214 IPR006652 GO:0005515
Phco1g00170 354 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Phco1g00170 354 SUPERFAMILY Kelch motif 76 338 IPR015915 GO:0005515
Phco1g00170 354 Pfam Kelch motif 105 155 - -
Phco1g00170 354 Pfam F-box domain 4 44 IPR001810 GO:0005515
Phco1g00170 354 Pfam Kelch motif 165 200 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00170 Phco-Chr1 1233310 1234374 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00170 1 1233310 1234374 Phco1g00170 1 1233310 1234374 ECH
Phco10g01939 10 41338418 41339500 Phco1g00170 1 1233310 1234374 PCT