Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01939 ATGGAGTTGATTTCAGGTCTACCAGAGGACGTTGCCCGAGACTGTTTGATTAGGGTTCCTTACGAGCAATTCGCGGCGGTGGCATCCGTCTGCAAAGGCTGGAGCTCCGAGATTCACTCGCCGGAGTTTCACCGTCGGAGGAGAACCACCAAACACGCACAGAAAATCCTTGTCACGGTTCAATCCAAGATAGAATCCGAAAAAGCCCGAACCGGCTTGCTTGCGAAGGTCTCAGCGAATCCGGTTTACCGGCTGAGCGTGTTCGAACCGGAAACGGGTCTGTGGAGCGAGTTGCCCTTGGGACCCGAACTCGCTTCCGGGTTACCCATGTTCTGTCAGATAGCGGGTGTCGGGTACGAGCTTGTGGTTATGGGCGGGTGGGACCCAGATTCGTGGAAAGCGTCGAATTCGGTTTTTATCTACAACTTTCTGTCGGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCCGAACATTTTTCGCGTGCGCGTCTGATCAAAATCATACGGTGTACGTAGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAAGTCAGCGCTTGCGTACGACGTAGCGAACGACGTGTGGGTCCCGCTCCCGGACATGTCGCGCGAGCGCGACGAGTGCAAGGCCGTGTTCCGCCGCGGCGCGCTCTGCGTCGTGGGTGGCTACTGCACGGAGATGCAGGGGCGGTTCGAGCGGAGCGCGGAGGTTTTCGACGTAGCCACGTGGAAGTGGGGCCCGTTGGAGGAGGAGTTCTTGGATGCGGCCGCGTGTCCTCGAACATGCGTGGACGGTGGAGATGGTGCGGAAGGGGAAATGTACATGTGCCGCGGTGGTGATGTGGTGGTGTTGCAAGGGGAGACATGGCGGAAGGTTGCGAAGGTACCGAGTGAGATTCGGAACGTTGCGTGCGTGGGAGTGTGGGAAGGGAGCATGTTTGTTATTGGGTCGAGTGGGTTTGGGGAACCGCATATGGGCTTTGTGCTGGATCTGAAGAATGGGGCTTGGGCCAAACTTGTGAGCCCGGAAGAATACACTGGGCATTTGCAATCGAGTTGTATTTTGGAAATGTAG 1083 0.5817 MELISGLPEDVARDCLIRVPYEQFAAVASVCKGWSSEIHSPEFHRRRRTTKHAQKILVTVQSKIESEKARTGLLAKVSANPVYRLSVFEPETGLWSELPLGPELASGLPMFCQIAGVGYELVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDQNHTVYVAGGHDEEKNALKSALAYDVANDVWVPLPDMSRERDECKAVFRRGALCVVGGYCTEMQGRFERSAEVFDVATWKWGPLEEEFLDAAACPRTCVDGGDGAEGEMYMCRGGDVVVLQGETWRKVAKVPSEIRNVACVGVWEGSMFVIGSSGFGEPHMGFVLDLKNGAWAKLVSPEEYTGHLQSSCILEM 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01939 360 CDD F-box_AtAFR-like 3 47 - -
Phco10g01939 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Phco10g01939 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
Phco10g01939 360 Gene3D - 44 355 IPR015915 GO:0005515
Phco10g01939 360 SUPERFAMILY Kelch motif 80 339 IPR015915 GO:0005515
Phco10g01939 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Phco10g01939 360 Pfam Kelch motif 169 205 IPR006652 GO:0005515
Phco10g01939 360 PANTHER OS02G0208700 PROTEIN 2 359 IPR044595 GO:0080037|GO:2000762
Phco10g01939 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
Phco10g01939 360 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01939 Phco-Chr10 41338418 41339500 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01939 10 41338418 41339500 Phco10g01939 10 41338418 41339500 ECH
Phco10g01939 10 41338418 41339500 Phco1g00170 1 1233310 1234374 PCT