Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00157 ATGCCCGAGACAGCTACTACACCAACCGATTCCTCCTCTACCAGTCTATTTGAGCTTCTCACCGAAATGAAGAAGCAATCTTGTCCAGAATCACTCACCTTACAAGCAAAATCACCCTCCCAATACTCCTCCGAATGCTGGTTCGACGATGCATGCATCTTGGACATGGATTACTTCGTGAAGACCCTTTCTGGCATCAAGGCCAAAGGTGTTCGTGCAGACCTTATTGGCTCCATCATCACACACTATGCCTCCAAATGGCTCCCTGATCTTTCTGCTGGTGATATGGTGGAAAAGGGTCTCACCCAATTCGAGGAATCACAGGAAAGCGTGACGGCTTCATGGATGAAGAAGAGGTTCTTCGTGGAAACCTTGGTGGGTGTTCTGCCTCCTGAGAAAGATGCAATTCCATGCAACTTTCTGCTCAGGCTTCTGAGAACGGCCAACATGGTTGGGGTTGAGGGTACCTACAGGCAAGAGCTTGAGAACCGTATTTCGTGGCAGTTGGACCAGGCTTCGTTGAAGGAGTTGGTGATTCCATCTTTCAGCCACACTTGTGGTACTCTCTTGGATGTTGAGCTTGTCATTAGGCTGGTTCAGAGGTTCGTGAGTTTGGACAGTGAGGGAGCTAAGAGCGTTGCTTCTATGATTAAGGTGGCTAAGCTAGTTGATTCCTACCTTGCTGAGGCTGCTGTGGACGCCAATTTGAGCTTGAATGACTTCGTTACCCTTGCTGCCGCTCTTCCTAGCCATTCTAGAGCAACGGATGATGGCTTGTATCGAGCCATTGATACCTATCTTAAAGCACATCCAGCAGTGTCAAAGCAAGAAAGGAAGGGTCTTTGCAGGTTAATTGACAGCAGAAAACTGACCCCAGAAGCATCACTCCACGCAGCACAAAACGAACGATTTCCAGTTAGAGCAGTGATTCAGGTGCTGCTTGCTGAGCAAAGCAAACTGACACGCCACGTGGATTGGAGCGGTTCTTTGGTGAGTGGGACAAGAAGCCCTAGTGCGTTGGACTTACCAACACGGTGTCTCTCGAAGCGCGAGGTGAACGCGCAACAGCACGAGATAAGGAAGCTGAAGGACGACGTGTACAGGTTGCAGAGCCAGTGCAACGCCATGCAGGCACAGATGGAGAGAATGGTGGAGAAGAAGAAGGGGTTCTTCAAGTGGAAGAAGTTTGCTTTTAGCAAAGCTGAACATGAAAAAATGGAACACGTGCTTGAAGGGAATGGAATGTACACGCCTGCGGGTCTGAAAACCAGATTGGTGAATGCGAAAGGTAGCAAGAATAACAATGCTCACAAGTGGAGGAAATCCATGAAAGTTGAACATGTTAGAGTTTCAAATTCTGCCACTACCTCCCTCAGCAACGACCACAACCCAGATTCTGATATTTGCCAACTGTGCCTTCTTGGGAACCTGGACCGTGCCATGAGCTACTTATACTCCATGCACGAGCTTCGAATTCCTGTTGAAGATGAAGCTTACGTTGCTATACAACTATGTGAGTGGAAGAGGCAAGGAAGGAAGGGTCTCGTGTCTACTCTTATGTTCCACGTCCAAGACCCTTTTGAGCCTTCAGCTGAGGAATGCCCTTTTGAGCATGTTTGTGGGAGAATGGTGAAGAGGGATTTGTTCTTTTGGAATGTTTTGGTTGGTGAATATGCTAAAGTTGGCTTCTTTGACGAGGCTTTGGACCTCTATCATAGAATGTTGTGGGTTAGTGAGAGGCCTGAAGTGTACAAATTCCCTTGTGTTTTGAGGACTTGTGGTGGCATGCTGAATTTTAAGAAGGGTAGAGAGATTCATGTGCATGTTCAAATTTTGATTCATGGGAACATCATCGATGTAGCCAAAGCATGA 1872 0.4754 MPETATTPTDSSSTSLFELLTEMKKQSCPESLTLQAKSPSQYSSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASKWLPDLSAGDMVEKGLTQFEESQESVTASWMKKRFFVETLVGVLPPEKDAIPCNFLLRLLRTANMVGVEGTYRQELENRISWQLDQASLKELVIPSFSHTCGTLLDVELVIRLVQRFVSLDSEGAKSVASMIKVAKLVDSYLAEAAVDANLSLNDFVTLAAALPSHSRATDDGLYRAIDTYLKAHPAVSKQERKGLCRLIDSRKLTPEASLHAAQNERFPVRAVIQVLLAEQSKLTRHVDWSGSLVSGTRSPSALDLPTRCLSKREVNAQQHEIRKLKDDVYRLQSQCNAMQAQMERMVEKKKGFFKWKKFAFSKAEHEKMEHVLEGNGMYTPAGLKTRLVNAKGSKNNNAHKWRKSMKVEHVRVSNSATTSLSNDHNPDSDICQLCLLGNLDRAMSYLYSMHELRIPVEDEAYVAIQLCEWKRQGRKGLVSTLMFHVQDPFEPSAEECPFEHVCGRMVKRDLFFWNVLVGEYAKVGFFDEALDLYHRMLWVSERPEVYKFPCVLRTCGGMLNFKKGREIHVHVQILIHGNIIDVAKA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00157 623 Pfam PPR repeat 551 575 IPR002885 -
Phco1g00157 623 Coils Coil 352 379 - -
Phco1g00157 623 ProSiteProfiles NPH3 domain profile. 45 319 IPR027356 -
Phco1g00157 623 Gene3D Tetratricopeptide repeat domain 427 614 IPR011990 GO:0005515
Phco1g00157 623 PANTHER OS12G0117600 PROTEIN 26 428 IPR043454 -
Phco1g00157 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Phco1g00157 623 Pfam NPH3 family 46 295 IPR027356 -
Phco1g00157 623 NCBIfam pentatricopeptide repeat 551 575 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00157 Phco-Chr1 1101228 1104675 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00157 1 1101228 1104675 Phco1g00157 1 1101228 1104675 ECH
Phco10g01958 10 41524232 41526435 Phco1g00157 1 1101228 1104675 PCT