Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00133 ATGATGATAAACACCAAAAGAATTCCTTTATTTCTTCAAGACACACTCACTCACTCATCTCCATTTTCACTTCTCCTTTCTCGGATCTCTCTCACACCCTTTCTCTCTTTTCTCCTTCTCATTCGCTTTTCCTTCACAAGGTGGGAGATGGCGCAAATTCTGCTTCATGGGACTCTCCACGCCACCATCTACGAGGTTGATAAGCTCCACGCTGGTGGTGGCGGCGGCAATTTTTTCACTAAGCTCAAGCAAAACATTGAGGAGACTGTAGGTATTGGAAAGGGAGTTACTAAACTCTATGCAACCATTGATCTGGAGAAGGCAAGAGTAGGAAGGACTAGAATTATTGAAAATGAACATACTAATCCCAAATGGCAGGAGTCTTTTCACATTTATTGTGCCCATGTGGCTTCAAATATTATATTTACTGTGAAAGATGATAATCCCATTGGGGCAACTTTAATTGGAAGAGCATATGTGCCTGTTTCTGAGGTCTTGGATGGCGAGGAAATAGATAGGTGGGTTGAAATCTTGGACACAGAGAAAAATCCAATACAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCTCAAAAGACCGCAACTGGGCTCGAGGAATTAGAAGTCCAAAATACCCTGGAGTTCCCTATACTTTCTTCTCACAGAGGCAAGGATGTAAGGTATTTCTGTACCAAGATGCTCATGTACCTGATAACTTTGTACCTAAAATACCTCTTTCTGGAGGCAAGAATTATGAGGCTCATAGGTGTTGGGAGGATATATTTGATGCGATCACTAATGCAAAACACTTGATATACATTACTGGTTGGTCTGTTTATACTGAAATTTCCTTGGTAAGGGATTCTAGGAGGCCAAAGCCTGGGGGAGACCAAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTTAAGGTATTGATGCTTGTTTGGGATGATAGAACATCAGTTGGTTTGTTGAAAAAAGATGGATTGATGGCTACTCATGATGAAGAAACCCAGCAGTTCTTCAGTGGCACTGATGTGCACTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGGAGCATTGTTCAAGATTTACAAATTTCTACCATGTTTACTCATCACCAGAAGATTGTGGTGGTTGACAGTGCATTGCCTGGAGGTGGAGGGTCTGAGAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATCGACCTCTGTGATGGAAGATATGACACTGCCTTCCACTCACTTTTCAGAACCCTAGACACAGCACACCATGATGATTTTCATCAACCTAACTTTACTGGTGCTGCAATCACAAAAGGTGGTCCCAGGGAACCATGGCATGACATCCACTCCCGGCTTGAAGGACCCATTGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGAAAGCAAGGTGGGAAGGATATACTTGCTCCACTAAGAGAGCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACGTTTCCTGAAGATCATGAGACCTGGAATGTTCAGCTATTTAGATCTATTGATGGTGGCGCTGCTTTTGGGTTCCCAGATACTCCTGAAGATGCTGCCAAAGCCGGACTTATTAGTGGGAAGGATAATATCATTGATCGTAGCATTCAAGATGCTTATATTCACGCTATTCGTCGTGCTAAGAATTTCATCTATATTGAAAATCAGTATTTCCTTGGAAGCTCGTTTGCCTGGAGCTCTGACGATATTAAGCGCGAAGACATTGGTGCATTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCGCCGTGTATGTTGTAGTCCCTATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAAAAGAGAACAATGGAGATGATGTACAAGGACATTATTCAGGCACTCAGAGCTAAGGGAAGCGATGAAGATCCGCGAAACTACTTGACATTCTTCTGCCTTGGAAATCGAGAGGTGAAAAAATCAGGAGAATATGAGCCTTCCGAAAAACCAGATCCTGATTCAGATTATCAGAGAGCTCAGGAAGCCCGGCGTTTCATGATTTATGTTCATACCAAGATGATGATTGTTGACGATGAATACATAATCATTGGATCTGCCAACATCAACCAGAGGTCAATGGATGGGTCTAGAGACTCTGAGATTGCCATGGGTGCTTATCAGCCATATCATTTGGCTACCAGACAGCCGGCACGCGGCCAAGTCCACGGTTTCCGCTTGTCATTGTGGTATGAACACCTTGGCATGCTTAATGACTCCTTCCTCACGCCAGAAAGTGAAGAATGCATTCGTAAGGTGAACCAAGTTGCTGACAAATATTGGGATCTGTATTCTAGTGAGTCACTTGAGCGTGACCTTCCCGGTCACCTTCTACGCTACCCCATTGGGGTTGCCAGTGAAGGAGATGTCACTGAGCTGCCAGGATTTGAATTCTTCCCTGACACCAAGGCTCGCATTCTTGGTGCCAAAGCTGACTACCTCCCCCCTATCCTCACTACCTAG 2580 0.4411 MMINTKRIPLFLQDTLTHSSPFSLLLSRISLTPFLSFLLLIRFSFTRWEMAQILLHGTLHATIYEVDKLHAGGGGGNFFTKLKQNIEETVGIGKGVTKLYATIDLEKARVGRTRIIENEHTNPKWQESFHIYCAHVASNIIFTVKDDNPIGATLIGRAYVPVSEVLDGEEIDRWVEILDTEKNPIQEGSKIHVKLQYFDVSKDRNWARGIRSPKYPGVPYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLSGGKNYEAHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGDQTLGELLKKKASEGVKVLMLVWDDRTSVGLLKKDGLMATHDEETQQFFSGTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGGGSEKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFTGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDILAPLRELEDVIIPPSPVTFPEDHETWNVQLFRSIDGGAAFGFPDTPEDAAKAGLISGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSSDDIKREDIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGVPESASVQAILDWQKRTMEMMYKDIIQALRAKGSDEDPRNYLTFFCLGNREVKKSGEYEPSEKPDPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGSRDSEIAMGAYQPYHLATRQPARGQVHGFRLSLWYEHLGMLNDSFLTPESEECIRKVNQVADKYWDLYSSESLERDLPGHLLRYPIGVASEGDVTELPGFEFFPDTKARILGAKADYLPPILTT 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00133 859 Pfam C2 domain 58 177 IPR000008 -
Phco1g00133 859 ProSiteProfiles C2 domain profile. 39 175 IPR000008 -
Phco1g00133 859 FunFam Phospholipase D alpha 1 55 210 - -
Phco1g00133 859 SUPERFAMILY Phospholipase D/nuclease 202 495 - -
Phco1g00133 859 Pfam Phospholipase D C terminal 778 849 IPR024632 -
Phco1g00133 859 Gene3D Endonuclease Chain A 532 750 - -
Phco1g00133 859 SMART pld_4 705 732 IPR001736 GO:0003824
Phco1g00133 859 SMART pld_4 376 415 IPR001736 GO:0003824
Phco1g00133 859 CDD PLDc_pPLDalpha_2 543 752 - -
Phco1g00133 859 FunFam Phospholipase D delta 251 495 - -
Phco1g00133 859 Pfam Phospholipase D Active site motif 376 415 IPR001736 GO:0003824
Phco1g00133 859 Pfam Phospholipase D Active site motif 706 732 IPR001736 GO:0003824
Phco1g00133 859 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 200 IPR035892 -
Phco1g00133 859 PIRSF PLD_plant 46 859 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Phco1g00133 859 Gene3D C2 domain 56 209 IPR035892 -
Phco1g00133 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Phco1g00133 859 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 376 415 IPR001736 GO:0003824
Phco1g00133 859 FunFam Phospholipase D 518 751 - -
Phco1g00133 859 CDD C2_plant_PLD 51 198 - -
Phco1g00133 859 PANTHER PHOSPHOLIPASE D 52 847 IPR015679 -
Phco1g00133 859 SUPERFAMILY Phospholipase D/nuclease 507 789 - -
Phco1g00133 859 Gene3D Endonuclease Chain A 249 491 - -
Phco1g00133 859 SMART C2_3c 58 174 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00133 Phco-Chr1 954486 960241 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00760 7 5889430 5892974 Phco1g00133 1 954486 960241 ECH
Phco1g00133 1 954486 960241 Phco1g00133 1 954486 960241 ECH