Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00068 ATGTCGTGGTTTCTCTTTGGTTATAAGATTGTTGTCACCGTTCCCTGCAACTACTGTTTCGGCGCAAGCATCTTCAGCTTCAAAGGAAGGAGATTTTGTTTTTATCTATCAACAAGGAAAATGTCAGGTGAAGAGGTTGTTGTCCCAGCTGAGCCAGCTGCTTCCATTCCTGGTGAGCCCATGGATATCATGACTGCCTTACAACTTGTGCTCAGAAAATCTCTGGCTTATGGTGGTCTTGCACGAGGCCTTCACGAGGCTGCAAAAGTGATCGAGAAGCATGCTGCACAGCTCTGTGTTCTGGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTTGTTAAGGCCATTTGTGCAGAGCACAATGTTAGCCTCCTCACTGTTCCTAGTGCAAAGACCCTGGGTGAATGGGCTGGTTTGTGCAAGATTGATTCCGAAGGAAAAGCTAGGAAGGTCACTGGTTGCTCCTGTGTGGTTGTCAAGGATTTCGGTGAGGAGCATGAAGCCTATAACGTTGTTCTGCAGCATGTCAAGTCTCAATGA 543 0.4715 MSWFLFGYKIVVTVPCNYCFGASIFSFKGRRFCFYLSTRKMSGEEVVVPAEPAASIPGEPMDIMTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKAICAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00068 180 SUPERFAMILY L30e-like 60 178 IPR029064 -
Phco1g00068 180 FunFam 40S ribosomal protein S12 47 180 - -
Phco1g00068 180 PRINTS Ribosomal protein S12E family signature 150 163 IPR000530 GO:0003735|GO:0005840|GO:0006412
Phco1g00068 180 PRINTS Ribosomal protein S12E family signature 125 146 IPR000530 GO:0003735|GO:0005840|GO:0006412
Phco1g00068 180 PRINTS Ribosomal protein S12E family signature 70 83 IPR000530 GO:0003735|GO:0005840|GO:0006412
Phco1g00068 180 PRINTS Ribosomal protein S12E family signature 84 100 IPR000530 GO:0003735|GO:0005840|GO:0006412
Phco1g00068 180 Gene3D - 47 180 IPR029064 -
Phco1g00068 180 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 66 159 IPR004038 -
Phco1g00068 180 ProSitePatterns Ribosomal protein S12e signature. 66 84 IPR000530 GO:0003735|GO:0005840|GO:0006412
Phco1g00068 180 PANTHER 40S RIBOSOMAL PROTEIN S12 56 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00068 Phco-Chr1 505710 507444 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g02046 10 42085446 42086925 Phco1g00068 1 505710 507444 PCT