Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01929 ATGGCATCTTCAGATGATGAGGGAGAGGCTCAGCTGCTATCTGTGTCAAATTACTATTTCGAAGATGACAAAGATGTGCCGGTGTGTTTTTCTGTGTTGCCAATTCGGTGGAGTGAGTCAGAGAGTCCAGTTGGCAAGAAAATACAGGTGTTTTTGCGTGGTTTTGCAGATAATGGGCTGCAGAAAGTTTTCGTGCAAGTTGTTGCGTGGAGGTTTGATCTTTCTTGTGTGAGGCCTGAGATATCGGTATTGTCAAAGGATGGGAGATGGATTAAGCTTGAGAAGCCTAGGAAGAGCTATGAGGAAACCATAAGAACTATTTTGATCACCATTCACTTCATGAGTTATGCGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAACATGAGTAAGAATAAGGAGTTTAGATCTTATGAGGTTTTGCCCTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGGTTCTGGAAGATAAAGATAGGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAACTGATGATACTGACAATGATTTGATTGATGAAATTGGTGAAGATTCAGATGGAGAGGATGGGTTGTTTGATTCTGTTTGTGCAATTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAATGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGGAAGTTGATGATATCCAGAATTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGTTCTGATAAGTTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGCTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACAGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTATTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCATTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGAAAGATCTCATTTGATGAAATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACACGAGATTGATGATGAACTTGGAACTCCTATAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTACTGTTCGAGAAAATACTGAGGATAATGCAAAGCCTGCAAATAAAGAGAGGGTTATATTGAACAAGAACAATATGGTCTCAGAAAGTTTAATTGGCAAAAAAGATGCTGCGAAATTTTCTAAACTGTCTGGTAAAATGTCTTCTGGAAAAGTGGGTGACAAGAAGTCTGAAAAGATTTTTGGGTCAAATATCTCAAGGAAGAAAACAAATGAGGCATCAAGGAGTTTGAATGAAAGTAAGAGGCCATTAATCCCAAAAGAAAGCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCTTTTTGGAATAATGGTTCTGAGCAAATGAATTCTGGTAATAGGGTTGATAATGTAGCTAATAATTCCCGGCCTGTTAAGCCTACTAAAAAGTTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGGGATTGGTTGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGGGCACAATTTTGCTAGTACTCATACTCACTCATTGAAAAATGTTGTGGAGAAAACCATTACATTGGGGAAACTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATATTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAACTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGCTACACATCATTTGGCCGCCATTTTACACAAGTTGAAAAGCTGGCAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTTAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGGAAGAGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGACTGTACAAACAAAGGAGTTGCCTATAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGGCTTAAGGCAGCATTGGCTAACAGGTTTATAGACAAAGCTCTCGAGTTCAGACCAAAACTCATGATTCTCATTGTACCACAAGAGACAGAGAGACTAGATGAAAAACGGCAGCCTTATGATCTTGTCTGGGAGGATGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAATGGAATGTAAAGCCGCCTCCACTGTTTCTTTGGAGTCGCCCTGATTGGACTAGCAAGCACAAGGCCATAGCTCGGGAGCGTGGTCACCTGATAATCCAGCGTGAGGTGTCAAAAATGGAAAGCTTTGATGAAGAAAATTCACCTTCCAGTCATAATAACGAGGATAATTCTGGTGTCAATATCATGCCAGGTGATGACCTCTTGAATTCAATTGATGCACCTATCAATGAAGGTCAAATGGGATACTCACCATATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGGGTGAGCGAGGCTGAGAAGACCTTATGGAAGAGGAAACGAACTGAGGAAAATGATGGAAGGGGACTTGGTGTGACATCACCACTCAATCCAATTGATGGGAGATCCTCAGTTGAACGTTTTCAGCCTAAACATGACATGCCACCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGCATTTGGAGCCCACCTCTTCCTCACGTACAGGGGGGATTGGGATTAGAGCAGCCTATAGCGGGACCCAGAATTGGCCAAGTGTTGCCAATCCCCTTTATGATTCTGGGGTTACAGGCGTAGATGGACGCCATAGCAGCCTTATGAGAGACACCGGATATAGACCCTATATCAGCAGGGAGGATGAGAGCAACCTTAGGGAAGTAGAGACTAGGCAACAGATTCGCCAATATGGGCTTCAGAATCCTAATAATATGACGAGTAATTATCTATTATCTGCTCACGATCCTGCTTATAGTCACCACATGGGGTCAAGTTATCTGGCTCATGGTTCATTATTTGAGTCTCCTTATGTTATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTAGACGAATTAAACCATGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTATAGTAGGTAGAAATGACACTCTGCCCCAACCTGGATATGGGAGCTGGATGCCAGGTTTTGCAGGTGGTTCTCACCATCTCTATTCACGCCAGAATTCAGCAGACCGGTTCAACGAGTAG 3621 0.417 MASSDDEGEAQLLSVSNYYFEDDKDVPVCFSVLPIRWSESESPVGKKIQVFLRGFADNGLQKVFVQVVAWRFDLSCVRPEISVLSKDGRWIKLEKPRKSYEETIRTILITIHFMSYAKRNPDSSAKSAWDNMSKNKEFRSYEVLPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMVLEDKDRLKIKKLSDEEVKDLARPGFITDDTDNDLIDEIGEDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKEVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKISFDEIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDELGTPIRDHIKFPNVKATVRENTEDNAKPANKERVILNKNNMVSESLIGKKDAAKFSKLSGKMSSGKVGDKKSEKIFGSNISRKKTNEASRSLNESKRPLIPKESRKSEGAENKSSLGAKLFAFWNNGSEQMNSGNRVDNVANNSRPVKPTKKLSSALPSLDEDAERGLVAMFKEATSSVTLEDVVKGHNFASTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNIRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLAGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQTKELPIGSKLIMGLNPPFGLKAALANRFIDKALEFRPKLMILIVPQETERLDEKRQPYDLVWEDERFLSGKSFYLPGSVDANDRQIEQWNVKPPPLFLWSRPDWTSKHKAIARERGHLIIQREVSKMESFDEENSPSSHNNEDNSGVNIMPGDDLLNSIDAPINEGQMGYSPYGSVDRGSQERQEYRVSEAEKTLWKRKRTEENDGRGLGVTSPLNPIDGRSSVERFQPKHDMPPPDFEVVDKGYRHLEPTSSSRTGGIGIRAAYSGTQNWPSVANPLYDSGVTGVDGRHSSLMRDTGYRPYISREDESNLREVETRQQIRQYGLQNPNNMTSNYLLSAHDPAYSHHMGSSYLAHGSLFESPYVMNAPAMQRYAPRLDELNHVRMDPLGSEPPIVGRNDTLPQPGYGSWMPGFAGGSHHLYSRQNSADRFNE 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01929 1206 MobiDBLite consensus disorder prediction 488 541 - -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 492 508 - -
Phco11g01929 1206 SMART PHD_3 228 283 IPR001965 -
Phco11g01929 1206 SMART PHD_3 288 356 IPR001965 -
Phco11g01929 1206 SMART PHD_3 357 424 IPR001965 -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 560 584 - -
Phco11g01929 1206 CDD PHD2_NSD 288 355 - -
Phco11g01929 1206 Pfam Cytosine specific DNA methyltransferase replication foci domain 11 124 IPR022702 -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 900 921 - -
Phco11g01929 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 405 IPR013083 -
Phco11g01929 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 515 540 - -
Phco11g01929 1206 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 909 - -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 972 994 - -
Phco11g01929 1206 MobiDBLite consensus disorder prediction 560 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01929 Phco-Chr11 15721737 15737651 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01929 11 15721737 15737651 Phco3g00199 3 1467631 1476756 PCT