Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01847 ATGGCTTCGACGAGGAGTTTGCTCATTGAGTCACTGGTCTCTAACGCCGCCACCTTGGATTCCTGCATGATCTTCTTTGCTAGCTACTACTCACTCACCATCTTTCACCTTTTGTATCTTTATACGCTCATCATCAAAAAAGTGACCAACTCAGAACCAAGTCGCTCCCTTCCAAGAAAGAAACGCATCGAAAAAAAGAAGCCAACGGCACCTCACGCCGTCACCGTTTGCCAGCTCACTCTTCCGTCCCTTTCCCCACGCCACGTCACCACTGACGCTTCTTCTAACGGTATATGTTCCGTCCCCGCGGAACACGTAACGACGTTCCACCAATGCCGTTACGAACTCCGTAAGGCCCACTTTTCGGCCCAACCCCAAGTCACAACAAGGTCTTCTTCTTCTTCTACTGCTACAGCTTCTTTCTCTCTTCTTCATCGTCATCGCGCACTTTCTCTCTCTAACGCTCTTTCTTTCTCTCTCTCATTCTCTTTTTCTCTCTCAGAATTTTCTTCTCTCTTCGATTCCTCTCACTTGTTCAACTTTTCTCGCTCCTTTTCTCTTCCCTCAAAACACTCCCTCTTCGTATTGATGTCGGAAAAGGGTCGGCCACTACCAAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCGGCTGAGGGGTTCACAGTGATATTTAATAAGGCTAGGGATGAAAAAAAGACAGGTGGCAATCCTGAGTCACCAGCAAAGACTGCCGGTGATCCTCATAGCAAACCTGCAGTAGATCCTGGCAAAACTCAGACTAAAAAATGGTTTTGCTGCATGCAACCTTCTGCGGAATGA 822 0.4745 MASTRSLLIESLVSNAATLDSCMIFFASYYSLTIFHLLYLYTLIIKKVTNSEPSRSLPRKKRIEKKKPTAPHAVTVCQLTLPSLSPRHVTTDASSNGICSVPAEHVTTFHQCRYELRKAHFSAQPQVTTRSSSSSTATASFSLLHRHRALSLSNALSFSLSFSFSLSEFSSLFDSSHLFNFSRSFSLPSKHSLFVLMSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPAKTAGDPHSKPAVDPGKTQTKKWFCCMQPSAE 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01847 273 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 199 234 IPR008700 -
Phco11g01847 273 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 138 266 IPR040387 -
Phco11g01847 273 MobiDBLite consensus disorder prediction 229 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01847 Phco-Chr11 14833632 14838434 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01847 11 14833632 14838434 Phco11g01847 11 14833632 14838434 ECH
Phco11g01847 11 14833632 14838434 Phco3g00145 3 958568 959604 PCT