Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01332 ATGCTAAATGCTTGTATTGTAACCTATGATGCACCGATAGTTCAGCTTGTGTCACATATTCGTATCGATATTATAGATTGTAACACTATGAGGAAGAATTCAGTAATTGTTCTGGATGTATTGCATGCGTTCTGTGCTGGTTTTTGTATTGATAAGATGATGATTTCTTATCTCCATCGGCAGGGGACTCCGGTGAATATTACTGCGGGTTCTCTTGTCTGGGTTGAAGATCCAGAAGTATCTTGGATTGATGGGCAGGTATCAAAAATCAAGGGAAATGATGCTGAAATTGAAACAACTAATGGAAAGAAGGTGCTCAGAAAGTTATCAAAAATATATCCCAAAGATATGGAAGCTCCTGCGGGTGGAGTGGATGATATGACTAAGCTTTCCTATTTGCACGAGCCTGGAGTCCTGCAGAACTTAAAAATTAGATATGAATTGAATGAAATTTATACTTATACTGGTAATATTCTGATTGCAATAAATCCATTCCAAAGGCTACCTCATATTTATGATTCACACATGATGCAACAATACAAGGGAGCACCATTTGGAGAGTTAAGTCCTCATGTATTTGCCGTAGCTGATGTTGCATATAGGGCAATGATACACGAAGGAAAAAGCAATTCAATTTTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGAGATATCTTGCCTTCTTAGGTGGTAGGGCTGCCACTGAAGGACGAACTGTTGAGCAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACAGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGACAAGAGTGGTAGAATCTCGGGAGCAGCCATTCGAACATACCTTTTGGAGAGATCTCGGGTTTGCCAGATTAGTGATCCTGAACGCAACTACCACTGCTTTTATTTTCTTTGTGCTGCACCACAGGAGGAAATTGAAAAATACAAATTAGGAAATCCTAAAACGTTTCATTACCTCAACCAGTCAAAATGCTATGACCTGGCTGATATAAATGATTCTCGTGAGTATCTTGCTACCAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAGCAGGTATTTCTTTTGCATGAGCATGAATTTAGCTTCTTTTTGTCTAGAAATGGAAAATTTATCCTCACAGTTCTTACCTCTCCACTTCCCTTTCCGTTTTTCTGTAAGGAAGCAATTTTCAGAGTTGTTGCTGCGATTCTTCATATTGGGAATATTGATTTTGCAAAAGGCAAGGAAATTGATTCATCAGTTCCAAAAGATGATAAAGCCAAATTCCACTTAGAAACAACTGCTGAGCTTCTTATGTGCAATGCTGGTTCCCTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGAAGCCTCGATCCCCAAAGTGCAGCAGTGAGCAGAGATGGCTTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATTGGACAAGACTCCAGTTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTCTGCATTAATTTCACAAACGAGAAGTTGCAGCAACATTTCAATCAGCACGTGTTTAAGATGGAGCAAGAAGAATACACGAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATAATTGCACTCCTTGATGAAGCTTGTATGTTTCCAAAGTCCACACATGAAACATTTTCAAACAAACTTTATCAAACATTTAAGAATAACAAACGCTTTATTAAGCCAAAATTATCTCGAACAGATTTCACTATTTCTCATTATGCTGGCGAGGTGCACTATCAGTCTGATCAGTTTTTGGACAAAAACAAAGATTATGTGGTTGCTGAGCATCAAGATTTATTGACTGCTTCCAAATGTCCATTTGTAGCAGGCCTTTTTCCTCTACTTCCAGAAGAGACATCCAAATCTTCTAAATTTTCTTCAATTGGTTCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAGCTCTACAGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATTCCAATATTATGCAGCAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTATACACCGATTTGCCCTTCTTGCTCCAGAGATCACAGAAGCACATCATGATGAGAAGACTGTTTGTCAAAAGATTCTGGAAAAAGCACGGCTTAAAGGATATCAGATTGGACAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACAAAGAGCTCAAATGCTTGGTAATGCAGCAAAAACTATTCAACGGCGTATACGAACCCATCAAGCTCGTAAACATTATCTTGCACTACGCAAGAAGACTACAATTGTGCAGTCTCTTTGGAGAGGAAGACTTGCATTTAAATTCTATAAAAACTTGAGAAGGGAGGCAGCTGCAGTGAAAATTCAGAAGAATATACGCAGATATGAATCTAGGAAAAGCTATACTAAACTCAAAGCATCAGTACTTACTGTGCAAACAGCTTTAAGGGCAATTGCTTCGCTCAAGGAGTTCAGATTTAGGAAACAGGCTAAGGCTTCCATCATTATTCAGGCTCAGTGGCGGTGCCACAAATCTGCTTCATATTATAAGAAGCTCAAGAAAGGTTCAATTGTCACACAATGCCGATGGAGGGGTCTAATGGCCAGGAGAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCACTTAAAGAGGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAAAAGAGTTTAAGGAGCAACCTAGAAGAATCCAAAGCGCAAGAGATAGCAAAACTGCAGAATTTACTGCAGGAGACGCAGAACAAAGTTGATGAAACCAATGCATTGCTTATAAAGGAGCGAGAGGCTGCAAGGAAAGCTATTGAAGAAGCACCTCCTGTTGTTCAAGAAACTCAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACAGTGGAAATTGAGAGTCTAAAGACCTCCCTTGAGTCAGAGAAGCAGAAAGTTGATGACCTTGAAATGAAATATAATGAGTCCCAAGCTTATTGTGAAGAAAAGAGTAAAATATTAGAAGACACGGAGAAGAAGGTTCGTCAGCTACAAGAATCCTTGACCAGACTAGAAGAGAAGATTGCTAATTCAGAATCAGAGAATCAAGTTCTACGTCAACAAGCTGTGTCGATGGCACCCAATAAGTTCCTCTCAGGACGCTCTAGATCTGTTATACAGCGACCGGATGGTGGACATATTGGAACAGAAGCAAAGTCAACTTTGGATATGCATAGCACATCAATGAACCACAGGGAACAGACTGAAGTGGAGGATAAACCACAGAAATCACTCAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAAATGCATTGCACAAAACCTAGGCTTTGCTGGGAATAGACCAATTGCTGCTTGTATCGTATACAAATGCCTCTTGCATTGGAGATCATTTGAAGTGGACCGTACTAGCGTTTTCGATCGTCTAATCCAAACTGTTGGTCACGCAGTTGAGACGCAGGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTGTCTTGTTACTACAGCGCACACTAAAGGCAAGTGGTGCGGCTGGAATGGCTCCTCAACGTCGTCGATCTTCATCAGGGAGTCTGTTCGGGAGGGTGACACATAGTTTCCGTGGAACTCCAGCTGGAGTCACCCTTCCCCTAATCAATGGTAGCATGAGCGGTGTAGATACGTTAAAAGTTGAAGCCAAGTACCCTGCTCTTCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCCTGCTTGGATTATGCATCCAGGCACCCAGAACATCTAGAGCGAGCTTGGTGAAGGGATCATCACGTTCGGTTGCAAACACTGAAGCCCAGAAAGCTTTAATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGCAAATCATGTTCCCCCGTTTTTGGTTCGTAAGGTGTTCACTCAAATATTTTCTTTCATCAATGTCCAACTTTTTAACAGTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAATCTGGTTTGGGTGAATTGGAGGATTGGTGCTGTGGCGCCACTGATGAGTACTGTGGTTCGGCATGGGATGAGCTCAGACATATAAGACAGGCTATTGGATTTTTGGTCATACATCAGAAACCAAGGAAAACGCTGAATGAAATAAGTCATGACCTGTGCCCAGTCCTCAGCATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAATATGGCACACATAGCGTATCCGCTGATGTTATATCCAATATGAGAGTGTTGATGACTGAAGATTCTAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGATTTAGCGAAGTCGAAGGAACTGATCGATGTGTCTGATTTAGAGCCCCCACCACTATTACGTGAAAACACTGGCTTTAGTTTTCTGTTGCCACGCCCAGACGGACAGATTTCCTAG 4881 0.4061 MLNACIVTYDAPIVQLVSHIRIDIIDCNTMRKNSVIVLDVLHAFCAGFCIDKMMISYLHRQGTPVNITAGSLVWVEDPEVSWIDGQVSKIKGNDAEIETTNGKKVLRKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMQQYKGAPFGELSPHVFAVADVAYRAMIHEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQISDPERNYHCFYFLCAAPQEEIEKYKLGNPKTFHYLNQSKCYDLADINDSREYLATRRAMDIVGISQKEQVFLLHEHEFSFFLSRNGKFILTVLTSPLPFPFFCKEAIFRVVAAILHIGNIDFAKGKEIDSSVPKDDKAKFHLETTAELLMCNAGSLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDSSSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNNKRFIKPKLSRTDFTISHYAGEVHYQSDQFLDKNKDYVVAEHQDLLTASKCPFVAGLFPLLPEETSKSSKFSSIGSRFKLQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFENSNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFIHRFALLAPEITEAHHDEKTVCQKILEKARLKGYQIGQTKVFLRAGQMAELDAQRAQMLGNAAKTIQRRIRTHQARKHYLALRKKTTIVQSLWRGRLAFKFYKNLRREAAAVKIQKNIRRYESRKSYTKLKASVLTVQTALRAIASLKEFRFRKQAKASIIIQAQWRCHKSASYYKKLKKGSIVTQCRWRGLMARRELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRSNLEESKAQEIAKLQNLLQETQNKVDETNALLIKEREAARKAIEEAPPVVQETQVIVEDTQKIESLTVEIESLKTSLESEKQKVDDLEMKYNESQAYCEEKSKILEDTEKKVRQLQESLTRLEEKIANSESENQVLRQQAVSMAPNKFLSGRSRSVIQRPDGGHIGTEAKSTLDMHSTSMNHREQTEVEDKPQKSLNEKQQENQELLIKCIAQNLGFAGNRPIAACIVYKCLLHWRSFEVDRTSVFDRLIQTVGHAVETQDNNDVLAYWLSNASTLVLLLQRTLKASGAAGMAPQRRRSSSGSLFGRVTHSFRGTPAGVTLPLINGSMSGVDTLKVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKSGLGELEDWCCGATDEYCGSAWDELRHIRQAIGFLVIHQKPRKTLNEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSADVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDLAKSKELIDVSDLEPPPLLRENTGFSFLLPRPDGQIS 1626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01332 1626 Coils Coil 972 1045 - -
Phco11g01332 1626 PRINTS Myosin heavy chain signature 209 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 PRINTS Myosin heavy chain signature 256 283 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 PRINTS Myosin heavy chain signature 524 552 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 PRINTS Myosin heavy chain signature 577 605 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 PRINTS Myosin heavy chain signature 152 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 68 117 IPR004009 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 Gene3D Kinesin motor domain 518 757 IPR036961 -
Phco11g01332 1626 ProSiteProfiles IQ motif profile. 832 858 IPR000048 GO:0005515
Phco11g01332 1626 MobiDBLite consensus disorder prediction 1184 1206 - -
Phco11g01332 1626 FunFam Class V myosin 534 673 - -
Phco11g01332 1626 Gene3D - 534 718 - -
Phco11g01332 1626 ProSiteProfiles IQ motif profile. 949 978 IPR000048 GO:0005515
Phco11g01332 1626 SMART MYSc_2a 117 828 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 880 978 IPR027417 -
Phco11g01332 1626 CDD MYSc_Myo11 136 815 IPR036018 -
Phco11g01332 1626 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Phco11g01332 1626 SMART DIL_2 1440 1547 IPR002710 -
Phco11g01332 1626 FunFam unconventional myosin-Va 928 976 - -
Phco11g01332 1626 Pfam DIL domain 1441 1544 IPR002710 -
Phco11g01332 1626 Pfam Myosin N-terminal SH3-like domain 69 109 IPR004009 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 Gene3D Myosin VI head, motor domain, U50 subdomain 411 696 - -
Phco11g01332 1626 Gene3D Kinesin motor domain 88 394 IPR036961 -
Phco11g01332 1626 Coils Coil 1070 1146 - -
Phco11g01332 1626 MobiDBLite consensus disorder prediction 1187 1205 - -
Phco11g01332 1626 FunFam Myosin 2 410 524 - -
Phco11g01332 1626 Gene3D - 880 927 - -
Phco11g01332 1626 Gene3D - 829 879 - -
Phco11g01332 1626 Gene3D - 928 977 - -
Phco11g01332 1626 PANTHER MYOSIN 114 1553 - -
Phco11g01332 1626 Pfam IQ calmodulin-binding motif 880 898 IPR000048 GO:0005515
Phco11g01332 1626 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Phco11g01332 1626 Pfam IQ calmodulin-binding motif 832 850 IPR000048 GO:0005515
Phco11g01332 1626 Pfam IQ calmodulin-binding motif 953 970 IPR000048 GO:0005515
Phco11g01332 1626 ProSiteProfiles Myosin motor domain profile. 122 827 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 ProSiteProfiles Dilute domain profile. 1254 1565 IPR002710 -
Phco11g01332 1626 ProSiteProfiles IQ motif profile. 878 907 IPR000048 GO:0005515
Phco11g01332 1626 CDD MyosinXI_CBD 1205 1588 IPR037975 GO:0007015
Phco11g01332 1626 FunFam Myosin heavy chain 312 367 - -
Phco11g01332 1626 Pfam Myosin head (motor domain) 412 815 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 Pfam Myosin head (motor domain) 124 377 IPR001609 GO:0003774|GO:0005524|GO:0016459
Phco11g01332 1626 ProSiteProfiles IQ motif profile. 926 953 IPR000048 GO:0005515
Phco11g01332 1626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 880 IPR027417 -
Phco11g01332 1626 Gene3D - 762 828 - -
Phco11g01332 1626 SMART iq_5 829 851 IPR000048 GO:0005515
Phco11g01332 1626 SMART iq_5 852 874 IPR000048 GO:0005515
Phco11g01332 1626 SMART iq_5 925 947 IPR000048 GO:0005515
Phco11g01332 1626 SMART iq_5 877 899 IPR000048 GO:0005515
Phco11g01332 1626 SMART iq_5 948 970 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01332 Phco-Chr11 10070578 10083848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01332 11 10070578 10083848 Phco11g01332 11 10070578 10083848 ECH
Phco11g01332 11 10070578 10083848 Phco6g01094 6 11030995 11046129 PCT