Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00946 ATGAGCCTTGTTGTTTCTGAGGATGCCCTCAACAAGCTCCAAGCTCTCATGGATCAAGTTGAGGAGGAGCCACTGCTCAGAACTTTTCAGAATGTTCATCAAGGATGTGTCACCGAAACCTTAATGAGATTTCTAAAAGCAAGGGAGTGGAATGTTACCAAGGCACATAAAATGATAATCGATTGTTTAAATTGGAGAGTGCAAAATGAGATTGACAACATATTATCGAAACCTATAATTCCTACTGATTTTTACCGAGGCATTCGAGATTCACAACTTATAGGTTTGTCAGGGTACTCAAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCTCATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCATATTCAAATTAACGAATATCGTGATCGTGTAATATTGCCTTCTGCATCAAAGAAGCATGGGCAGCCTATTACCACATGTGTAAAAGTTTTGGATATGACTGGTCTGAAGTTGTCAGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTACCCTGAGAAAACAAATACTTATTACATTGTAAATGTGCCCTACATATTTTCAGCCTGTTGGAAGGTTGTGAAGCCACTTCTACAAGAGAGGACAAGAAGAAAAGTGCAAGTCTTGCCAGGTTGTGGGCGAGATGAACTGTTGAAGATCATGGATTATGCATCGCTGCCACACTTCTGTAGAAGAGAAGGCTCTGGATCATCCAGGCATTCAGAGAATGGAAATGGAAATGAAAACTGCTATTCCTTGGATCATCCTTTCCATCAGAAGCTCTATAATCACATAAAGGAGGAATCCAGAATCCACGAACCTGTTGAACCAATCAAGCAGGGATCATTCCATGTAGATTTTCCTGAACCCCCTGCTGAGAAAGCTGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAGCAATGGGACTTGTGATTGA 993 0.4058 MSLVVSEDALNKLQALMDQVEEEPLLRTFQNVHQGCVTETLMRFLKAREWNVTKAHKMIIDCLNWRVQNEIDNILSKPIIPTDFYRGIRDSQLIGLSGYSREGLPVFAIGVGLSSFDKASVHYYVQSHIQINEYRDRVILPSASKKHGQPITTCVKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDYASLPHFCRREGSGSSRHSENGNGNENCYSLDHPFHQKLYNHIKEESRIHEPVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKISNGTCD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00946 330 SUPERFAMILY CRAL/TRIO domain 83 247 IPR036865 -
Phco11g00946 330 CDD SEC14 85 243 IPR001251 -
Phco11g00946 330 Coils Coil 3 23 - -
Phco11g00946 330 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 241 IPR001251 -
Phco11g00946 330 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 2 328 - -
Phco11g00946 330 Gene3D - 4 290 IPR036865 -
Phco11g00946 330 SUPERFAMILY CRAL/TRIO N-terminal domain 7 78 IPR036273 -
Phco11g00946 330 Pfam CRAL/TRIO domain 92 243 IPR001251 -
Phco11g00946 330 Pfam CRAL/TRIO, N-terminal domain 10 61 IPR011074 -
Phco11g00946 330 SMART sec14_4 88 249 IPR001251 -
Phco11g00946 330 SMART CRAL_TRIO_N_2 37 62 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00946 Phco-Chr11 6967136 6970859 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00946 11 6967136 6970859 Phco11g00946 11 6967136 6970859 ECH
Phco8g02420 8 27124197 27127983 Phco11g00946 11 6967136 6970859 PCT