Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00472 ATGGGGGCGTATAGAGCTGATGAGGATTACGATTACCTGTTCAAGGTTGTGCTGATTGGGGACTCTGGCGTGGGAAAATCCAACCTTTTGTCGAGGTTCACCAAGAATGAATTCTGCCTTGAATCAAAGTCCACCATTGGGGTTGAGTTTGCAACCAGAAGCATTAGGGTGGATGATAAGATTGTCAAAGCTCAGATTTGGGACACTGCTGGCCAGGAAAGGTACCGAGCGATCACTAGTGCATATTATCGAGGAGCTGTTGGTGCTTTGTTAGTGTATGATGTTACCCGCCATGTTACATTTGAGAATGTGGAGAGATGGTTCAAGGAGCTCAGAGATCACACGGATGCCAACATTGTGGTGATGGTTGTTGGTAACAAAGCAGACTTGCGTCATCTACGAGCAGTTTCCACCGAAGATGCTACAACTTTTGCAGAACGGAAAAAAACATTTTTCATGGAAACCTCTGCCCTCGAGTCCATGAACGTTGAAAATGCCTTCACAGAACTGCTCACACAGATCTACCATGTTGTAAGCACGAAGGCCCTTGAAATTGGCGATGATCCAGCAGCATTACCAAAAGGACAGACGATAAATGTTGGGTCTCGTGATGGTGTATCAGATGTGAAGCAGAATGGATGCTGTTCTGCTTGA 654 0.4587 MGAYRADEDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWFKELRDHTDANIVVMVVGNKADLRHLRAVSTEDATTFAERKKTFFMETSALESMNVENAFTELLTQIYHVVSTKALEIGDDPAALPKGQTINVGSRDGVSDVKQNGCCSA 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00472 217 SMART ras_sub_4 11 177 - -
Phco11g00472 217 ProSiteProfiles small GTPase Rab1 family profile. 9 215 - -
Phco11g00472 217 Gene3D - 6 215 IPR027417 -
Phco11g00472 217 FunFam ras-related protein RABA1f 6 215 - -
Phco11g00472 217 ProSiteProfiles small GTPase Ras family profile. 8 217 IPR001806 GO:0003924|GO:0005525
Phco11g00472 217 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Phco11g00472 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 180 IPR027417 -
Phco11g00472 217 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Phco11g00472 217 SMART rab_sub_5 14 177 - -
Phco11g00472 217 SMART ran_sub_2 19 214 - -
Phco11g00472 217 NCBIfam small GTP-binding protein domain 12 169 IPR005225 GO:0005525
Phco11g00472 217 SMART rho_sub_3 16 177 IPR001806 GO:0003924|GO:0005525
Phco11g00472 217 PANTHER DRAB11-RELATED 7 201 - -
Phco11g00472 217 PRINTS Transforming protein P21 ras signature 37 53 - -
Phco11g00472 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Phco11g00472 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Phco11g00472 217 PRINTS Transforming protein P21 ras signature 14 35 - -
Phco11g00472 217 PRINTS Transforming protein P21 ras signature 55 77 - -
Phco11g00472 217 CDD Rab11_like 11 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00472 Phco-Chr11 3201879 3203643 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00472 11 3201879 3203643 Phco11g00472 11 3201879 3203643 ECH
Phco11g00472 11 3201879 3203643 Phco9g01501 9 35147719 35148828 ECH