Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g00277 ATGGCCTCAAGTGCTTCACTCTCCTATAAATACATACTTCAATCACATTCATTCTCCAAACACAAACAAGAAAACAAAAGAGAGAGGAAAAAAATGATGATGTCCCAATGGCATCTACCCATTTTCCTCTTGGTTACAGCAACAGTGAGCCTAGCCCAGAACAGTCCTGAAGACTATGTTGAGGTGCATAACCAGGCTCGAGCGGAGGTTGGCGTTGGTCCAATATCGTGGAACCACACTCTTGAAGCCTATGCTCAAAGGTATGCGAATGAGAGGATCCCTGACTGCAACCTTGAACACTCTATGGGACCCTATGGCGAGAATCTGGCAGAAGGGTACGGCGAAATGAAGGGTTCAGATGCTGTGAAATTCTGGCTGACAGAGAAGCCATACTATGACTACAGGTCCAATAAATGTGTTCATGATGAGTGTGGGCATTATACTCAGATTGTGTGGCGCAACTCTGTTAATGTAGGATGCGCAAGAGCTAAGTGTAACAACGGTTGGATGTTTGTCATCTGCAGTTATTCTCCACCAGGGAACTTTGAAGGAGAACGACCTTATTGA 567 0.4515 MASSASLSYKYILQSHSFSKHKQENKRERKKMMMSQWHLPIFLLVTATVSLAQNSPEDYVEVHNQARAEVGVGPISWNHTLEAYAQRYANERIPDCNLEHSMGPYGENLAEGYGEMKGSDAVKFWLTEKPYYDYRSNKCVHDECGHYTQIVWRNSVNVGCARAKCNNGWMFVICSYSPPGNFEGERPY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g00277 188 ProSitePatterns CRISP family signature 1. 145 155 IPR018244 GO:0005576
Phco11g00277 188 SUPERFAMILY PR-1-like 47 188 IPR035940 -
Phco11g00277 188 SMART SCP_3 54 184 IPR014044 -
Phco11g00277 188 ProSitePatterns CRISP family signature 2. 171 182 IPR018244 GO:0005576
Phco11g00277 188 Gene3D CAP 54 188 IPR035940 -
Phco11g00277 188 CDD CAP_PR-1 56 188 - -
Phco11g00277 188 Pfam Cysteine-rich secretory protein family 61 176 IPR014044 -
Phco11g00277 188 FunFam Putative pathogenesis-related protein 1 53 188 - -
Phco11g00277 188 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 58 185 IPR001283 -
Phco11g00277 188 PRINTS Allergen V5/Tpx-1 family signature 75 93 IPR001283 -
Phco11g00277 188 PRINTS Allergen V5/Tpx-1 family signature 144 160 IPR001283 -
Phco11g00277 188 PRINTS Allergen V5/Tpx-1 family signature 171 184 IPR001283 -
Phco11g00277 188 PRINTS Allergen V5/Tpx-1 family signature 121 134 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g00277 Phco-Chr11 1822412 1822978 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g00277 11 1822412 1822978 Phco11g00277 11 1822412 1822978 ECH
Phco4g02489 4 46078168 46078641 Phco11g00277 11 1822412 1822978 PCT