Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco10g01684 | ATGGAGGTCCGTTACAATAACATCTGCTATCCCTACAGTACAGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACGTACGAACATGTTAACTTCATTTTTTCTGGCGCTTCAATTACTCAGGAGAGTTTATACCCTTCAAGTTCAACTACAAACTTTTACAAATCTGGGCAATCTGAACCAGGTAGTACCTCGTACTATCAGGATAGTAATGGTTACGAGGTGAATTATTATGAACAATTGATGGATGAGTATAGAAGGCACTCGGAAAACTCTGCAGCAATCAATGAACAGATGACAACAGTATGTATAGAAAGGGAAGAAGGAGTAAACAATGTCACACTAGACAGTTCTGTTGAATGTCCACGAAGGCATCATTATGATTTCAATGATTATGAGGTCAGTTGGGAAGACAATGTTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGACAGTTGGAACTGAAAGTCGTGGTCTCTCCCAAGAACAAATCTCATCGATTCCAGTATCAAAGTACAAGTGTGGCCGCTTCTTCTTCTTTAGGAAGAAGTCACGGGAGGAGAGATGCGTGATTTGTCAGATGGAATATAAAAGAGGGGATAAGAGGATGACTTTACCATGCAAACATGCCTATCATGCTAGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCTTGCCCTATGTGTTATAGGGAGGTGATTGTGGACGTGTCAAAACACAAATAA | 741 | 0.4035 | MEVRYNNICYPYSTAGSFIEYVEGLTYEHVNFIFSGASITQESLYPSSSTTNFYKSGQSEPGSTSYYQDSNGYEVNYYEQLMDEYRRHSENSAAINEQMTTVCIEREEGVNNVTLDSSVECPRRHHYDFNDYEVSWEDNVDPDNMTYEELLELGETVGTESRGLSQEQISSIPVSKYKCGRFFFFRKKSREERCVICQMEYKRGDKRMTLPCKHAYHASCGNKWLSINKACPMCYREVIVDVSKHK | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco10g01684 | 246 | Pfam | Ring finger domain | 193 | 234 | IPR001841 | - | |
| Phco10g01684 | 246 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 239 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Phco10g01684 | 246 | FunFam | E3 ubiquitin ligase BIG BROTHER | 154 | 239 | - | - | |
| Phco10g01684 | 246 | SUPERFAMILY | RING/U-box | 193 | 241 | - | - | |
| Phco10g01684 | 246 | ProSiteProfiles | Zinc finger RING-type profile. | 194 | 234 | IPR001841 | - | |
| Phco10g01684 | 246 | SMART | ring_2 | 194 | 234 | IPR001841 | - | |
| Phco10g01684 | 246 | Coils | Coil | 78 | 98 | - | - | |
| Phco10g01684 | 246 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 239 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco10g01684 | Phco-Chr10 | 39377798 | 39380715 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco10g01684 | 10 | 39377798 | 39380715 | Phco10g01684 | 10 | 39377798 | 39380715 | ECH | |
| Phco10g01684 | 10 | 39377798 | 39380715 | Phco9g00660 | 9 | 4918036 | 4922341 | PCT |