Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01549 ATGGGAAGCAGCGTCACCCTTTTGATCTTATTGTTTGTTCTTTGTCATGGCGTCACAGTAACAATGGGGCGGTTCTGGAGGACAGAGGTGGAAGAGAGAAAAGAGGATCCTCCAAGACCAGACAATTTGTTCTTGATGAAGAAATCCAAACTCGTGATCAAAACCAGCGCTGGGAAGATGCGAGTGTTAGAAAGTTATGGTAGTAGAGCTTCGGAGAGGCACTTGCACATTGGTTTCATTACTATGGAACCAAGGTCCCTTTTCATTCCTCAGTACATTGATTCCTCTTTGATCATATTCGTGCGTTCAGGGGAAGCAAAGTTGGGAATCGTAAACAAAGGCAAACTGGCGCACAGAAGTTTAAAGATGGGAGACGTATATCAAATTCCAGCTGGTTCTGCATTCTACATAGTTAACATAGAAGGTGGTCAAAAGCTTCACATTATCTGCAGCATTGAACCCTCTGAAAGCTTGGGAGATGATGTTTTCCAGTCCTTCTATATTGGAGGTGGAATTCATCCAGCCTCAGTACTTGCTGGATTCGAGAGTGAAATCCTTGAAGCTGCTTTTAACGTATCAGGAGAAGAGTTGCGAAAATTCTTCACTAAGAAACACGGGGGGGCGATTGTGCATGTGAGAGATTCACAAGCCACAAGCATATGGACCAAGTTCCTTCAGCTTAAGGAGGAAGAAAAACTGCAACACCTGAGGGAGATGGTACAGCAACGACAAGAAAACGTAGAAATGGAGAAGGAGGATGAGGAATCTGGTGATGAAGAAGAGCAACAAACAAGTTGGTCATGGAGGAAGCTCTTGGAATCTGTATTTGGGGAAGAGAACAAGAACACGAGGGAGATGATTACTAAAAGATCCCCTCGCTCTTACAACCTTTATAACAGAAAACCAGATTTTCAAAACAATTATGGTTGGAGCGTTGCTGTAGATGGCTCTCACTATCATCCACTCAGAAGTTCTGGCGTTGGCATTTATCATGTCAATCTCTCAGCTGGATCAATGATGGCACCCCATGTGAATCCAAGGGCAACAGAATATGGCATAGTGCTAAAAGGTTCAGGTAGGATCCAAGTAGTGTTTCCAGATGGAAGCAATGCAATGGACACTCACATAAAAGTAGGGGATGTGTTCTTCATTCCAAGGTACTTTGCCTTCTGCCAAATAGCATCAAATGGTGAACCACTAGAGTTCTTTGGCTTCACCACCTCGGCTCAGAAGAATAGGCCAATATTTCTGGTGGGTTCCACGTCACTCATAAGGACCATGATGGGGCCTGAGCTAGCAACTGCATTTGGGGTGAGTGAAAAGACCATGAGGAGCATAGCTAAGGCACAACAGGAAGCTGTGATTCTACCAGCACCACATGAAGAGGTGCAGGTGGTGGTGGATGCAATTCCAAAGCTTGCAAAGGAATGA 1431 0.4465 MGSSVTLLILLFVLCHGVTVTMGRFWRTEVEERKEDPPRPDNLFLMKKSKLVIKTSAGKMRVLESYGSRASERHLHIGFITMEPRSLFIPQYIDSSLIIFVRSGEAKLGIVNKGKLAHRSLKMGDVYQIPAGSAFYIVNIEGGQKLHIICSIEPSESLGDDVFQSFYIGGGIHPASVLAGFESEILEAAFNVSGEELRKFFTKKHGGAIVHVRDSQATSIWTKFLQLKEEEKLQHLREMVQQRQENVEMEKEDEESGDEEEQQTSWSWRKLLESVFGEENKNTREMITKRSPRSYNLYNRKPDFQNNYGWSVAVDGSHYHPLRSSGVGIYHVNLSAGSMMAPHVNPRATEYGIVLKGSGRIQVVFPDGSNAMDTHIKVGDVFFIPRYFAFCQIASNGEPLEFFGFTTSAQKNRPIFLVGSTSLIRTMMGPELATAFGVSEKTMRSIAKAQQEAVILPAPHEEVQVVVDAIPKLAKE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01549 476 CDD cupin_7S_vicilin-like_N 52 216 - -
Phco10g01549 476 PANTHER OS03G0336100 PROTEIN-RELATED 7 460 - -
Phco10g01549 476 MobiDBLite consensus disorder prediction 244 264 - -
Phco10g01549 476 Coils Coil 225 253 - -
Phco10g01549 476 Gene3D Jelly Rolls 32 223 IPR014710 -
Phco10g01549 476 SUPERFAMILY RmlC-like cupins 35 454 IPR011051 -
Phco10g01549 476 Gene3D Jelly Rolls 286 459 IPR014710 -
Phco10g01549 476 CDD cupin_7S_vicilin-like_C 302 453 - -
Phco10g01549 476 SMART Cupin_1_3 49 198 IPR006045 -
Phco10g01549 476 SMART Cupin_1_3 295 444 IPR006045 -
Phco10g01549 476 Pfam Cupin 295 443 IPR006045 -
Phco10g01549 476 Pfam Cupin 52 196 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01549 Phco-Chr10 38272671 38274928 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01549 10 38272671 38274928 Phco10g01549 10 38272671 38274928 ECH
Phco10g01549 10 38272671 38274928 Phco9g00824 9 6376768 6379401 PCT