Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01398 ATGACCGAGGTCCTCCACTCCCCACCCCATTTTGCTTCTTCTTCTTCATCACCACCAACAACAAAGACAAGGACAACCTCAACCTCAACCTCAACCACAACAAACCCAACTCCTTCTTCCTCTTCATTCTCTCGCAATGCCTTTCTCCGACCACACATCTCTCTCTTGGCTCTTCTGTTGACCCTTCTCAGGAAATCCTTCCTTCCCCGCAAAACCATCTCCTCCATCATGGACATAGGCTCACCAACCAACGTACGCCATGTTGCTCATGTCACCTTTGATAGGTTCAACGGTTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGAAGTCCCCAGAAGGCCTCCTAGTGCTAGTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTCCAGAGGGAACAGTGTGCCAACTATTCTGCTATTGATGCAAAGGCATCTATATTCTCAAGGAGGGTTGCAGGTAGAGGGGATTTTCAGAATTAACGCGGACAATGGTCAAGCGGAGCATGTCAGGGATCAATTGAATCAGGGAGTGGTTCCAGAAGGCATTGATGTACATTGTTTGGCAGGGCTAATTAAGGCTTGGTTTAGGGAACTTCCTACAGGCATTCTGGATTCATTATCACCGGAGCAGGTCATGCAATGCCAGACTGAGGAGGAGTGTGCTGAAATAGTGAGACATCTACCTCATACTGAAGCTTCACTCTTGGACTGGGCCATCAATCTGATGACTGATGTTGTCCAACATGAACATGTTAATAAGATGAATGCACGTAACATTGCCATGGTTTTTGCACCTAACATGACGCAGATGGCCGATCCTATATCTGCACTGATGTATGCAGTTCAAGTAATGAACTTCTTGAAGACGCTCATATTAAGGACACTTCGGGAAAGAAAGGATTCTGTGGTAGAATCTAATCCTAGATTTTACGTAGATCCTTCGGGTGGTAATGGAAGCCAAAGACTTTTGGAGTCCTTCCAGCAAGATACTCCTGCAGAAAATGAAGTGGCTCAGGGAAACATTGTTTTAGAGAAAACTGGCTTTGAGTGTTCCCCTGGATCAGTCCAAAACAACTCAACAGAAGGAGAACTTGGCAGTCTGGCAAACTCTTCTGAGAATCTAGTTAGCAATGAGGAATTGTATTGTGAATTTCCACCCGTAGGAAACATGGGAAAGGGTAAAACTGGTCAATCAAGTAAATCAAATGGTAAAAGAGAGTCCAAAAAGACTAGAGGCGGCAACCTGTGA 1266 0.4518 MTEVLHSPPHFASSSSSPPTTKTRTTSTSTSTTTNPTPSSSSFSRNAFLRPHISLLALLLTLLRKSFLPRKTISSIMDIGSPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRPPSASASVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYSQGGLQVEGIFRINADNGQAEHVRDQLNQGVVPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCQTEEECAEIVRHLPHTEASLLDWAINLMTDVVQHEHVNKMNARNIAMVFAPNMTQMADPISALMYAVQVMNFLKTLILRTLRERKDSVVESNPRFYVDPSGGNGSQRLLESFQQDTPAENEVAQGNIVLEKTGFECSPGSVQNNSTEGELGSLANSSENLVSNEELYCEFPPVGNMGKGKTGQSSKSNGKRESKKTRGGNL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01398 421 ProSiteProfiles CRIB domain profile. 79 92 IPR000095 -
Phco10g01398 421 CDD CRIB 77 117 - -
Phco10g01398 421 SMART PBD_5 79 113 IPR000095 -
Phco10g01398 421 Pfam RhoGAP domain 141 275 IPR000198 GO:0007165
Phco10g01398 421 SMART RhoGAP_3 138 301 IPR000198 GO:0007165
Phco10g01398 421 FunFam Rho GTPase-activating protein 5 109 302 - -
Phco10g01398 421 MobiDBLite consensus disorder prediction 7 43 - -
Phco10g01398 421 Gene3D CRIB domain 75 109 IPR036936 -
Phco10g01398 421 MobiDBLite consensus disorder prediction 405 421 - -
Phco10g01398 421 MobiDBLite consensus disorder prediction 391 421 - -
Phco10g01398 421 ProSiteProfiles Rho GTPase-activating proteins domain profile. 124 309 IPR000198 GO:0007165
Phco10g01398 421 PANTHER MKIAA1688 PROTEIN 1 416 IPR044785 GO:0005096
Phco10g01398 421 MobiDBLite consensus disorder prediction 1 43 - -
Phco10g01398 421 CDD RhoGAP 141 297 - -
Phco10g01398 421 Gene3D Rho GTPase activation protein 112 308 IPR008936 -
Phco10g01398 421 SUPERFAMILY GTPase activation domain, GAP 119 298 IPR008936 -
Phco10g01398 421 Pfam P21-Rho-binding domain 78 105 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01398 Phco-Chr10 36617545 36621085 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01398 10 36617545 36621085 Phco9g01043 9 8964189 8967411 PCT