Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01233 ATGCGGCGAAGAGCGACGGATTTTCGCAGGCCAGTGCGTAGGAAGGTTCCAGATGCTTTTTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTGTATATTCTGAGCAAAGGGAACAAAATTGAGCCCAGACCCGCTTTGTCCAAGAAAACTTACAAGCATGATAAGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAACTCTAACTCAGTTGCGAGACAACTCAATGATCAGATATCTCTGGCAAAAGCTTTTGTCGTAATTGCCAAAGAAAGTAACAATCTCCAATTTGCTTGGGAATTAAGTGCCCAGATCCACAATTCACAGATGCTCCTCTCAAATGCTGCCACTAGGCGTGTTCCTTTGACAACCAGAGAAACAGAAAGGGCTATCCATGATATGGCATTATTGTTATACCAAGCCCAGCAGCTCCATTATGACAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAGCTCTTGAGGAACAGATGAATTCTGTTACTGAAAAGAGTTCGAAATATGGACAAATAGCTGCTGAAGAAGTTCCAAAAAGTCTTTACTGCCTTGGTGTTCGGTTGACAAGAGAATGGTTCAGAAACTTATATTTGCAAAAGAAATTGAAGGACAATAGACAAATGGAGATGAAGCTCAAGGATAACAATCTTTACCACTTTTGTGTTTTCTCTGATAACATTCTTGCTACTTCAGTTGTGGTCAATTCAACTGCAGTGAATTCTAAAAATCCCAATATGGTTGTTTTTCACCTTGTCACTGATGAAATAAACTATGCTGCGATGAAGGCATGGTTTGCCGTGAATGATTTCCATGGGGTGACTGTGGAAGTTCAGAAGTTTGAAGACTTTACTTGGTTAAATGCTTCATATGTTCCAGTGCTGAAGCAACTTCAAGACTCTGAAATACAGAGCTACTACTTTTCTGGCAACAGTGATGATGGAAGAACACCTATCAAGTTTCGTAACCCTAAATATCTATCCATGCTTAATCACCTTAGGTTCTACATACCTGAAGTTTTTCCTGCACTAAAGAAGGTGGTGTTCTTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGGTCTTTTTTCCATTGATTTGAAGGGTAATGTAAATGGAGCTGTTGAAACATGCATGGAGACATTTCACAGATACCATAAATATTTGAACTACTCCCATCCTCTTATACGTGCACAATTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTGAATGGAGGAAAAAGAACGTAACTGGCATTTACCACCACTGGCAGGAAAAGAATGTAGACCGAACATTGTGGAAACTTGGTACCTTGCCGCCTGGACTGTTGACATTTTATGGATTAACTCAGCCCTTAGATCCATCGTGGCACGTTTTGGGTTTTGGCTACACCAATGTTGATCCGCAGTTGATAGAGAGGGGAGCTGTGCTACATTTCAATGGGAATTCCAAACCATGGTTGAAGATTGGGATAGAGAAGTACAAGCCCCTATGGGAAAAATATGTTGAATACTCTCATCCTTTATTGCAGCAGTGTAACTTCCACTGA 1602 0.4057 MRRRATDFRRPVRRKVPDAFWWALCCAVILLFVYILSKGNKIEPRPALSKKTYKHDKIMEGLNITEEMLNSNSVARQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQMLLSNAATRRVPLTTRETERAIHDMALLLYQAQQLHYDSATMIMRFKAKIQALEEQMNSVTEKSSKYGQIAAEEVPKSLYCLGVRLTREWFRNLYLQKKLKDNRQMEMKLKDNNLYHFCVFSDNILATSVVVNSTAVNSKNPNMVVFHLVTDEINYAAMKAWFAVNDFHGVTVEVQKFEDFTWLNASYVPVLKQLQDSEIQSYYFSGNSDDGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSGLFSIDLKGNVNGAVETCMETFHRYHKYLNYSHPLIRAQFDPDACGWAFGMNVFDLVEWRKKNVTGIYHHWQEKNVDRTLWKLGTLPPGLLTFYGLTQPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKYVEYSHPLLQQCNFH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01233 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 229 528 IPR029044 -
Phco10g01233 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 65 532 IPR029993 GO:0047262
Phco10g01233 533 Pfam Glycosyl transferase family 8 235 507 IPR002495 GO:0016757
Phco10g01233 533 Coils Coil 155 175 - -
Phco10g01233 533 CDD GT8_like_1 228 520 - -
Phco10g01233 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01233 Phco-Chr10 34449643 34452361 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01233 10 34449643 34452361 Phco10g01233 10 34449643 34452361 ECH
Phco10g01233 10 34449643 34452361 Phco9g01252 9 12604768 12607152 PCT