Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco10g01031 ATGCTAAGCAAGGACAATATGCAGCTGCACATATCTCCAAGTTTGAGGCATGTCACTGTGTTTCCAGGCAAAGGGTTCAAGGAGTTTATCAAAGTGAAGGTTGCATCAAGGCGTGTCTCTTATCGGATGCTCTTCTATTTTCTCTTGTTCTTCACTTTTCTTCTTCGGTTTGTGTTTGTCTTAACAGCAGTGGATGGCATTGATGGAGAAAACAAATGCTCTACCATAGGTTGCCTAGGAAAAAAACTAGGACCAAGGATTTTGGGGAGACGGTCTGAATCAACTGTCCCAGAAGTGATATACCAAACATTAGTTGAACCTCTTGGCAAACATGAACTTCAGGGTAGGTTTGATATTCCACAAACCTTAGAAGAGTTCATGACTGAAATGAAGAGTGGTGGATATGATGCCAAGACATTTGCAATTAAACTTCGAGAAATGGTGACCCTTATGGAAGAAAGGACCAGAATGGCCAAGATTCAAGAATATCTGTATCGACATGTAGCATCAAGCAGTATACCAAAACAACTTCACTGCCTTTCCTTGAGTTTGGCCAATGAACACACCAACAACGCTGCAGCACGCCTTCAGCTCCCCTCTGCAGAACTAGTCCCTGCCCTGGTTGACAATTCCTACTTCCATTTTGTCCTTGCCTCAGACAATGTGCTGGCTGCATCAGTGGTTGCAACATCGCTTGTTCGCAACTTTTTGAGACCTCAGAAGGTTGTTCTGCACATAATTACAGACAGGAAGACTTATTACCCCATGCAGGCTTGGTTCTCATTGCATTCTTTGTCACCTGCTATAATTGAGGTGAAGGCATTGCACCATTTTGATTGGTTTACAAAGGGAAAGGTGCCTGTTCTGGAAGCCATGGAGAAGGATCAAAAGGTGAGGTCACAGTTTAGAGGGGGTTCATCTGCTATAATTGCAAATACAACTGAGAAGCCAAAAGTTATTGCAGCAAAACTGCAAGCACTTAGTCCCAAGTATAATTCAGTGATGAACCACATCCGGATACATCTCCCAGAGTTGTTTCCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACATCGTGGTACAAACTGACCTTTCACCTCTGTGGGACATTGAAATGAATGGAAAAGTGAATGGAGCTGTAGAAACATGTACAGGAGAAGATAAGTTTGTGATGTCAAAGAAGTTGAAAAGCTATTTGAACTTCTCCCACCCTCTAATATCCAAAAATTTTAATCCCAATGAATGTGCCTGGGCCTATGGCATGAACATTTTCGATTTGGAGGCTTGGAGGAAGACTAATATAAGCAATATTTACCATTACTGGGTTGAGCAGAATATCAAATCAGACCTGAGTTTGTGGCAGCTAGGGACATTACCTCCTGGATTGATAGCATTTCATGGCCATGTCCACGTTATTGATCCTTTCTGGCATATGCTGGGATTGGGATATCAGGAAAATACAAGTTTTGTTGATGCTGAGAGTGCTGGTGTCGTCCATTACAATGGCAGAGCAAAGCCATGGCTAGAAATAGCTTTTCCACAACTAAGTAAATTGTGGACGAAGTATGTTGACTTCTCAGATAAGTTCATCAAGAGTTGTCACATTAGGGCATCATAG 1620 0.4235 MLSKDNMQLHISPSLRHVTVFPGKGFKEFIKVKVASRRVSYRMLFYFLLFFTFLLRFVFVLTAVDGIDGENKCSTIGCLGKKLGPRILGRRSESTVPEVIYQTLVEPLGKHELQGRFDIPQTLEEFMTEMKSGGYDAKTFAIKLREMVTLMEERTRMAKIQEYLYRHVASSSIPKQLHCLSLSLANEHTNNAAARLQLPSAELVPALVDNSYFHFVLASDNVLAASVVATSLVRNFLRPQKVVLHIITDRKTYYPMQAWFSLHSLSPAIIEVKALHHFDWFTKGKVPVLEAMEKDQKVRSQFRGGSSAIIANTTEKPKVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIEMNGKVNGAVETCTGEDKFVMSKKLKSYLNFSHPLISKNFNPNECAWAYGMNIFDLEAWRKTNISNIYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSFVDAESAGVVHYNGRAKPWLEIAFPQLSKLWTKYVDFSDKFIKSCHIRAS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco10g01031 539 CDD GT8_like_1 213 525 - -
Phco10g01031 539 Pfam Glycosyl transferase family 8 212 512 IPR002495 GO:0016757
Phco10g01031 539 SUPERFAMILY Nucleotide-diphospho-sugar transferases 214 536 IPR029044 -
Phco10g01031 539 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 215 533 IPR029044 -
Phco10g01031 539 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 118 536 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco10g01031 Phco-Chr10 30791444 30794583 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01031 10 30791444 30794583 Phco10g01031 10 30791444 30794583 ECH
Phco10g01031 10 30791444 30794583 Phco9g01609 9 37788006 37790714 PCT