Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac7g03309 ATGTTTGAAGAGTTGGTGGGTGTGTTTCTGGTTCTTGCATCGTTCAGTTGTAGCCCATGGACAGTGTGGGGCAGCTCGTATTGCAATCGGATAAACTTGAAGGAAGTCCGGCCTCACAGTGTCAGTATTACCGAATTTGGGGCAGTTGGCGATGGGAACACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCGAGCTTTTTGTCCCTGCGGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACACTGTGGTTGGACAACGATGCAGTAATTCTTGGTTCAACGAACTCCGAGGACTGGCCAATTGTGGAGCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATCGAAGCCTCATTTATGGGCGTAATTTGACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGGACAAGTTTCGGAACAAAACATTGGCTTATACACGTCCTCATTTGGTCGAGTTGATGAATTCAACCGGGGTACTCATTTCAAATGTAACTTTCTTGAACTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAATTCAAAATGTCACAGTCATTGCTCCTCATGGTTCACCAAATACAGATGGCATTAATCCTGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAATATTAACATCCGCAGGCTCATTGGGAAAACAACGAGTGCCGGGATTGCTATCGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTAATTCACGTAGTGCAGTTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATATTTCTAACATGATATTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCTGATGACAATTATGACCCAGAAGCTCTACCGGTAATTGAAAGGATTACTATCAAGGATGTGATTGGGGAAAAAGTCAAACGTGCTGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACACTTAATGTGACCTCAAAATTGCCATGGAACTGCTCTTACGTTAAAGGATATTCTGACCTGGTTTCACCGGAAGCCTGTGAGCCTCTCAATGAGCGAATATCCCCTGAGCATTGTTCCGACTGTTGCTATGTACCAAACCACTTAACGAGTTTGGGAAATCAAAATTCGGGTGCTTGGGTTTAG 1383 0.4281 MFEELVGVFLVLASFSCSPWTVWGSSYCNRINLKEVRPHSVSITEFGAVGDGNTLNTKAFQNAIFYLNSFADKGGAELFVPAGRWLTGSFDLISHLTLWLDNDAVILGSTNSEDWPIVEPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWDKFRNKTLAYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSHVTIQNVTVIAPHGSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFNSRSAVRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDNYDPEALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVTSKLPWNCSYVKGYSDLVSPEACEPLNERISPEHCSDCCYVPNHLTSLGNQNSGAWV* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac7g03309 460 Pfam Pectate lyase superfamily protein 41 87 IPR024535 -
Phac7g03309 460 PANTHER PECTIN LYASE-RELATED 21 441 - -
Phac7g03309 460 SMART pbh1 269 290 IPR006626 -
Phac7g03309 460 SMART pbh1 325 346 IPR006626 -
Phac7g03309 460 SMART pbh1 235 267 IPR006626 -
Phac7g03309 460 SMART pbh1 208 234 IPR006626 -
Phac7g03309 460 SMART pbh1 296 317 IPR006626 -
Phac7g03309 460 Pfam Glycosyl hydrolases family 28 136 415 IPR000743 GO:0004650|GO:0005975
Phac7g03309 460 Gene3D - 23 416 IPR012334 -
Phac7g03309 460 SUPERFAMILY Pectin lyase-like 34 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac7g03309 Phac-Chr7 35347555 35351862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac7g03309 5 441 Glycoside Hydrolase AT3G62110 69.369 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac7g03309 - - gmx:100786985 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac7g03309 7 35347555 35351862 Phac7g03309 7 35347555 35351862 ECH
Phac1g03194 1 39426823 39431068 Phac7g03309 7 35347555 35351862 PCT