Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac1g00687 ATGTCTAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCACTATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCCCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTAGGAAGAGATCGCGCGTCAACGCTCCATTCGTGTTCGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCTATTGATGCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCCGTTGGCGAGGAGAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGCAAGGATGAAATCTGTGTCATCAAGAATTCCAGCGCAGAAAACATTAAAAAGGATGGTGATGATGTAGAATTTGGAGGTGAGGGATACCTCTCTCGGAACTTGGAAGGAAAGAAGGCCACAGATGTTAGACTGGCTGCCATAGCTGTTGGGACTGCATCTCGCGGAGGGCTGGGGAAGCTTTCCATCCGTGGAACCAACATGTGTCGTGGAGTGACTAGTGTTGGTCTCAAGGCAGTTGCTCATGGATGCCCATCTTTGAAGTCTCTTTCTCTATGGAACGTTTCTACTGTTGGTGATGAGGGCCTAATGGAGATCGCTAATGGTTGTCACCAGCTAGAGAAACTCGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGCTGTCGCTGGAATCATGCCCTAATGTTGGTAATGAAGGTCTACGAGCTATTGGGAAGTTCTGCCCCGATCTAAGGTCCATAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTTTCAACTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGCAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGGTTGCAGAAGCTGAAGTCACTCACAGTTGCATCATGCAGGGGAGTAACAGATATTGGACTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAACTGCACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATATCGTTTGCTAAGGCTGCTTCATCACTCCAGAGCCTTCGATTGGAAGAGTGCCACAGAATCACCCAATTTGGGTTGTTTGGTGTCCTTTTTAACTGTGGTGGGAAATTGAAGGCCATCTCTGTGGTGAGATGCTACGGAATCAAAGACCTGAGTTTGGTGTTGCCGACTGTATCTCCTTGTGAATCACTTAGGTCATTGACTATCTCCAACTGCCCTGGATTTGGCAACGCCTCCCTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTCGATGGAGTGACTGATGCTGGGCTTCTTCCACTGCTCGAGAGTTCTGAGGCTGGTTTGGTAAAAGTGAATCTCAGTGGTTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACTGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCCGACAGGAGCTTGCCCGCCCTGAGAAAAGTGGGCAGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGCAGCACGGTTGACATGCTTGTAGAGCTTCTCTGGAGGTGTGACATCCTCTCATAA 1932 0.4767 MSKVLGFSGGDDFCPGGSLYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIDALPDECLFEIFRRLPVGEERSACACVSKRWLMLLSSICKDEICVIKNSSAENIKKDGDDVEFGGEGYLSRNLEGKKATDVRLAAIAVGTASRGGLGKLSIRGTNMCRGVTSVGLKAVAHGCPSLKSLSLWNVSTVGDEGLMEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPDLRSITIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKTAHLHKCAFLSDNGLISFAKAASSLQSLRLEECHRITQFGLFGVLFNCGGKLKAISVVRCYGIKDLSLVLPTVSPCESLRSLTISNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGLLPLLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKVGRTLLGLNIQHCNAINSSTVDMLVELLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac1g00687 643 PANTHER UNCHARACTERIZED 534 626 - -
Phac1g00687 643 Gene3D - 60 110 - -
Phac1g00687 643 FunFam EIN3-binding F-box protein 1 446 643 - -
Phac1g00687 643 FunFam EIN3-binding F-box protein 1 60 109 - -
Phac1g00687 643 CDD F-box_AtTIR1-like 67 104 - -
Phac1g00687 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Phac1g00687 643 FunFam EIN3-binding F-box protein 1 135 253 - -
Phac1g00687 643 SMART LRR_CC_2 241 266 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 372 397 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 215 240 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 267 292 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 505 530 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 346 371 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 398 423 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 532 557 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 584 609 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 189 214 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 425 450 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 452 477 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 558 582 IPR006553 -
Phac1g00687 643 SMART LRR_CC_2 478 503 IPR006553 -
Phac1g00687 643 Pfam F-box domain 68 107 IPR001810 GO:0005515
Phac1g00687 643 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Phac1g00687 643 Pfam Leucine Rich repeat 478 500 IPR001611 GO:0005515
Phac1g00687 643 Pfam Leucine Rich repeat 564 580 IPR001611 GO:0005515
Phac1g00687 643 SUPERFAMILY RNI-like 317 639 - -
Phac1g00687 643 FunFam EIN3-binding F-box protein 1 254 443 - -
Phac1g00687 643 Gene3D Ribonuclease Inhibitor 135 254 IPR032675 -
Phac1g00687 643 Gene3D Ribonuclease Inhibitor 255 444 IPR032675 -
Phac1g00687 643 Gene3D Ribonuclease Inhibitor 445 643 IPR032675 -
Phac1g00687 643 SUPERFAMILY RNI-like 174 293 - -
Phac1g00687 643 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac1g00687 Phac-Chr1 5468903 5472806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac1g00687 K14515 - gmx:100819226 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac1g00687 1 5468903 5472806 Phac1g00687 1 5468903 5472806 ECH
Phac1g00687 1 5468903 5472806 Phac9g00386 9 2464798 2468479 PCT