Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3888 ATGATAACGTTAACAGATTTCTACCATGTGATGACATCAATGGTGCCACTTTACGTGGCTATGATATTAGCTTATGGTTCAGTGAAATGGTGGAAGATATTCTCTCCCGATCAATGCTCCGGCATCAATCGCTTCGTTGCTCTGTTTGCAGTTCCTTTACTTTCATTCCATTTCATTGCCTCTAACAATCCTTACAAAATGAACACACGCTTCCTCGTCGCAGACACACTTCAAAAGATTATCGTCTTACTTGCTCTCACCATTTGGGCCAACGTCAGCAAAAGGGGTTGTTTAGAATGGACAATAACACTCTTCTCCATTTCAACACTCCCAAACACTTTGGTTATGGGAATCCCTCTTCTCAAATGTATGTACGGTGGTGAATTTTCTGGGAGTTTGATGGTACAAATTGTGGTCCTTCAGTGTATTATTTGGTACACGTTGATTTTGTTCATGTTTGAGTTTAGAGGAGCAAGAATGCTTATCTCAGAACAGTTTCCAGACACTGCTGGTACCATTGTTTCCATTCATGTTGACTCTGATGTGATGTCGTTGGATGATGGAAGACAGTGTTTGGAAACAGAAGCTGTAATCAAAGAAGATGGGAAGCTTCATGTTATAGTGAGGAGATCAAATGCTTCAAGAAGGTCTCATTCTCAGTCTCATACAACACCTCGAGCTTCAAATCTGACGAATGCAGAGATATACTCTTTGCAATCATCAAGGAATCCAACTCCAAGAGGGTCTAGTTTCAACCACACAGATTTACATTCCATGATGGGTGGTAGTCGTAATTCTAACTTTGGTGCTTTTGATTTGAAAGGAACACCACCGAGGACTTGTAATTATGATAATTCAATGTCTACGACAAAGGGGAATTACCCTGCGCCAAACCCCGAAATGTTCTCTCCAAAAAACGTTGTTGCTGCTAAGAAAACGGAGGATCTTCATATGTTTTTTTGGAGTTCAAGTGATTCCCTTGTTTCTGATGTTAAATTGAATGTCTCTCCAGAAAAAGTGGAGGGTGAGGATGAGCACAAGAGAGGGGAGGAAGGTGGGGCAAAAACGATGCCACCAGCAAGTATAATGACGAGGCTGATATTGATAATGGTTTGGAGAAAACTTATCAGAAACCCAAACACATATTCGAGCATTATCGGCCTAACTTGGTCACTCATTTCATTCAGGTGGAATATTGAAATGCCTGTTATCATAGCAAAGTCTATTTCCATATTGTCGGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATTATAGCATGTGGTAATCGCATAGCAGCTTTCTCTATGGCCATTAGATTCCTTACCGGTCCAGCTGTCATGGCAGCTGCTTCCATTGTTGTTGGACTCAGAGGAACCCTCTTGAACGTTGCCATTGTTCAGGCAGCACTTCCACAAGGAATTGTCCCATTTGTCTTCGCCAAGGAATACAATGGTAATTTTTGGGATGTTGATTGCATTGCCCATAACGCTCGTTTATTACATCTTGTTGGGTCTATGAATGGAATGGATATATCAAAATGCTGA 1575 0.4171 MITLTDFYHVMTSMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYKMNTRFLVADTLQKIIVLLALTIWANVSKRGCLEWTITLFSISTLPNTLVMGIPLLKCMYGGEFSGSLMVQIVVLQCIIWYTLILFMFEFRGARMLISEQFPDTAGTIVSIHVDSDVMSLDDGRQCLETEAVIKEDGKLHVIVRRSNASRRSHSQSHTTPRASNLTNAEIYSLQSSRNPTPRGSSFNHTDLHSMMGGSRNSNFGAFDLKGTPPRTCNYDNSMSTTKGNYPAPNPEMFSPKNVVAAKKTEDLHMFFWSSSDSLVSDVKLNVSPEKVEGEDEHKRGEEGGAKTMPPASIMTRLILIMVWRKLIRNPNTYSSIIGLTWSLISFRWNIEMPVIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNRIAAFSMAIRFLTGPAVMAAASIVVGLRGTLLNVAIVQAALPQGIVPFVFAKEYNGNFWDVDCIAHNARLLHLVGSMNGMDISKC* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3888 524 TIGRFAM 2a69: auxin efflux carrier 1 497 IPR014024 -
Mtr8g3888 524 MobiDBLite consensus disorder prediction 217 232 - -
Mtr8g3888 524 MobiDBLite consensus disorder prediction 210 232 - -
Mtr8g3888 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 347 495 - -
Mtr8g3888 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 1 332 - -
Mtr8g3888 524 Pfam Membrane transport protein 9 495 IPR004776 GO:0016021|GO:0055085
Mtr8g3888 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 332 - -
Mtr8g3888 524 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 347 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3888 Mtr-Chr8 49496434 49499125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3888 1 494 Organic Solute Cotransporters AT1G73590 64.094 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3888 K13947 - gmx:100786572 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3888 8 49496434 49499125 Mtr8g3888 8 49496434 49499125 ECH
Mtr8g3888 8 49496434 49499125 Mtr6g1815 6 33038281 33043828 PCT