Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3843 ATGGGGAGCACTGGGTTAAGCAACTGCGATATCGGGCAGCGGCAAAGGTTAGGGATAACCGAGCCAATCTCATTGAGCGGACCGACTGAATATGATGTCGCCAAGACGCGTGAGCTCGAGAAGTACTTGCAAGACGCCGGCTTGTATGAGAATCAAGACGAAGCGATTTGTAGGGAGGAAGTGCTTGGCAGGCTAGACCAGGTGCATGGCCCCGGAGCAGATATTGACGTTCTTTGTGTGGGACCTAGACATGCAACCAGAAAGGAAGATTTCTTTGGTGAGCTGCATAAAATGCTATCTGAAATGCCAGAAGTGACAGAGTTACACCCAGTGCCTGATGCTCATGTTCCAGTGATGGGTTTCAAGTTCAACGGCGTCTCTCTGGATCTCCTTTATGCACAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAAGCAATATTACAATATACAGACGAACAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCATTTGGTTCCAAATATTCAGAATTTTCGTACGACATTGAGATGCGTGAAGTTATGGGCTAAGTGTCGTGGTGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGGTCGAATATGCCAGCTATATCCAAATGCACTGCCTAATATGTTGGTGTCTCGATTCTTTAGGGTATACACTCAGTGGCGTTGGCCAAACCCAGTAATGCTTTGTACTATTAAGGAAGGATCTCTTGGACTTCAAGTTTGGGATCCTAGAAGAAATCCCAAGGATAAATACCATCTAATGCCAATAATTACTCCTGCTTATCCGTGCATGAATTCTAGCTACAATGTGTCATTAAGTACATTGCGTGTTATGACAGAGGAATTTCAGAGGGGAGATGAAATATGTGAGGCTATGGAGGCTAACAAGGCTGATTGGGATACCCTTTTTGAGCCCTATCCATTTTTTGAATCGTATAAGAATTATTTGCGGATAGACATTTCAGCAGAGAATGTTGATGATCTTAGAAACTGGAAAGGCTGGGTTAAGTCTCGCTTGCGCCAGTTGACATTGAAGATTGAGAGGAACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGATTTTTCAGACAAATCTAGACCTTTACACTGTTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGCCAATGAAGGCGGACAATTTGATATGAGATTAACTGTTGAAGAATTTAAGCATTCTGTCAATGCGTACACGCAATGGAAACCTGGAATGAATATATCCATCTCCCATGTGAAACGCCGCAATATACCCGCCTTTGTATTTCCTGGTGGTGTTCGGCCTAAATGCCCATCCAAAGTAACCTGGGTGAGTAAGCGACGTTCAGAGCTTAGGGTTTCCGGCCATGGTCAAGCAGAAAAGTCTCAAGTGGGTAAAGAGTTAGGAGCAAACAATGATAGGAAGAGAAAGCAAGCAGAAGATAGTGGGGATGACTTGAGAAACTCCCGGTCCTTTTCCTCTCTGCCTCCCTCTAGCAGGGATGTTCATGAAGATGGAAATCCTGTCAGCATTGCTAATTCTTGTTCTGTGAAATGTGATGACACAGAACTCAACTGTATGAGTGAACAAAAGAGCGAGAAACCTGATTTGAATTTTTCAGGGGAGTGTCCTGGGGATAGAGAGACCGATGGATCAGTGAAAAGCAACTCACAAATTATCCCTCTACTTGCTGCTACTGATAGATCTAATTTTGAAGAAGCTGAAAAGGTTGTCATCCAGAAGATTGTGTGTGGTCCATGTGAGGTACATCAAGCCTTTCCTGAAGAACCTGATGAACTTGAAGATGATCTTGAGTATAGAAATAAAGTCAAAGATTTTGGTGGGAACTTGGCAAACATCAATTTCGACTCTACAAAGTCTGTAGTGGCAGCAGAACCTGTTTTTTCTCAAAAGGAAAATAGTAGTTCAACTCATATATACTCTAATGGGGGCTTGGAGGAGCTTGAGCCTGCTGAGCTTACAGCTCCATTGTTCTGTGGAAATCCAGCACCAGTGCCACAGCGGAAGCCTCTTATTAGGTTGAATTTCACCTCCCTGGGGAAAACTGCTGACAAAAGTTCTTAG 2157 0.4349 MGSTGLSNCDIGQRQRLGITEPISLSGPTEYDVAKTRELEKYLQDAGLYENQDEAICREEVLGRLDQVHGPGADIDVLCVGPRHATRKEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGFKFNGVSLDLLYAQLSLWVIPEDLDLSQEAILQYTDEQTVRSLNGCRVTDQILHLVPNIQNFRTTLRCVKLWAKCRGVYSNVAGFLGGINWALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCTIKEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSLSTLRVMTEEFQRGDEICEAMEANKADWDTLFEPYPFFESYKNYLRIDISAENVDDLRNWKGWVKSRLRQLTLKIERNTYGMLQCHPHPGDFSDKSRPLHCSYFMGLQRKQGVPANEGGQFDMRLTVEEFKHSVNAYTQWKPGMNISISHVKRRNIPAFVFPGGVRPKCPSKVTWVSKRRSELRVSGHGQAEKSQVGKELGANNDRKRKQAEDSGDDLRNSRSFSSLPPSSRDVHEDGNPVSIANSCSVKCDDTELNCMSEQKSEKPDLNFSGECPGDRETDGSVKSNSQIIPLLAATDRSNFEEAEKVVIQKIVCGPCEVHQAFPEEPDELEDDLEYRNKVKDFGGNLANINFDSTKSVVAAEPVFSQKENSSSTHIYSNGGLEELEPAELTAPLFCGNPAPVPQRKPLIRLNFTSLGKTADKSS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3843 718 MobiDBLite consensus disorder prediction 472 531 - -
Mtr8g3843 718 SUPERFAMILY PAP/OAS1 substrate-binding domain 177 326 - -
Mtr8g3843 718 Pfam Poly(A) polymerase predicted RNA binding domain 329 388 IPR007010 GO:0003723|GO:0043631
Mtr8g3843 718 Pfam Poly(A) polymerase predicted RNA binding domain 389 459 IPR007010 GO:0003723|GO:0043631
Mtr8g3843 718 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 68 - -
Mtr8g3843 718 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 68 680 - -
Mtr8g3843 718 CDD NT_PAP_TUTase 58 176 - -
Mtr8g3843 718 PANTHER POLY A POLYMERASE 1 68 - -
Mtr8g3843 718 PANTHER POLY A POLYMERASE 68 680 - -
Mtr8g3843 718 MobiDBLite consensus disorder prediction 491 511 - -
Mtr8g3843 718 MobiDBLite consensus disorder prediction 554 578 - -
Mtr8g3843 718 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 327 453 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mtr8g3843 718 Gene3D Poly(A) polymerase predicted RNA binding domain 328 443 - -
Mtr8g3843 718 Pfam Poly(A) polymerase central domain 18 326 IPR007012 GO:0004652|GO:0043631
Mtr8g3843 718 SUPERFAMILY Nucleotidyltransferase 16 173 IPR043519 -
Mtr8g3843 718 Gene3D - 144 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3843 Mtr-Chr8 49095822 49102277 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3843 K14376 - gmx:100816915 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3843 8 49095822 49102277 Mtr6g2125 6 37991921 37998521 ECH
Mtr8g3843 8 49095822 49102277 Mtr8g3843 8 49095822 49102277 ECH