Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3551 ATGGATGATTGTCCTCAAAAATTAAAAATCATCCCTGATCACTTTCAAATTCCAACTTCAAGTATAGAATCTATAGAATCTTCTCAGAGCAGACAATTATCTACTTCCGAAGAACCTGGAATTGATCAATCTTTAAGGTCCTCCCCCCATCTGTGGACTCGAAGAAAACTCAGGAGAACTTTCATGTTAAACTTGTTTACTTTACGAAAACTATCATGGGGGTCCGATACTGGAGGTCAGGAAAAGGTTGAGCTAACAGCTGCAGAAGTAGAGTCACTTCGATCGGAGCTTGCTGATTTAGAGGAGAGGGAAGCTCACTTGAAAGCTCAGTTGCAACATATTGATGAAGTTCTGCGGTCAGCTCGTCTATCTGGCTATTTAAACATTAGAACTAGATGGGCGGCACTTCCGGGAGAACCCCCACCTATAGATGATACTGAAGTAGATGATTGGCTTCCTCGCTTTGTCGTTCTTCATGGAGCATGTATATTCTTATATTTGTTGTGTACAGATATAAGTCCTCAGGACTCAACGCTTCTATCGGATATTCTTGAAGTAGGGAGATTGCCTTGTTTTAAGCGTGAAAATGATGATATTCAACATGCCTTTTATATTTTAACTCGCCACGGGTTTCGCTATGAGTGCTCAAGCAATTCTACGATACAGGTGGACTCTTGGTTAACAGCTTTACAAAGTTACACAAAATTAGAGTCTGATAGATCTGTTCCTAATGGTTCAATTGAGATATTGAAGACAGGTGCTTTGGTTGTCAATTTTGGCTCTTTCCGAAGCCTGATTGAGCCTTGCTATCTGGGTCTTAACATGGCCTCACACCTCTGCAAATCTGCTTCCAGAGCCGCCAGGTCTCTTCTCTCCGCTTCATTTCACTCTCAAGGACGCGCTGTAGCGGCGGCTTCAGCTGTTGCATCCATCACAAAAATGCCATTATTTGCTTCAAATTATGGGAGGAGGACAGCTTCTGGAAATGGATCTACCTCATGGATTGCTGGAGCACTCGCTCTTCCTGCTGCAGCTTACATCCTCCAAGATCAGGAGGTGCATGCTGCTGAGCTGGAGCGCACCTTCATTGCCATTAAGCCTGACGGAGTTCAAAGAGGACTGATTTCAGAGATTATATCTCGTTTTGAGAGGAAAGGCTACAAACTGGTGGGAATTAAAGTACTGCATCCTACAAAGGAATTTGCCAAACAGCATTATCATGACCTAAAAGAAAGACCCTTCTTTGATGGCTTGTGTGACTTCCTGAGCTCTGGCCCTGTTATTGCAATGGTGTGGGAAGGACAGGGAGTTATTGTCTACGGCCGTAAACTAATTGGAGCCACAGATCCACAGAAATCAGAGCCAGGAACCATTAGGGGTGATCTGGCTGTTGTTGTTGGAAGAAATATCATCCATGGGAGCGATGGTCCAGAGACTGCAAAGGATGAGATTAACTTGTGGTTTAAGCCAGAAGAATTGGTTAGTTTCACAAGCAATTCAGAGAAGTGGGTATATGGTGAAAACTGA 1527 0.4355 MDDCPQKLKIIPDHFQIPTSSIESIESSQSRQLSTSEEPGIDQSLRSSPHLWTRRKLRRTFMLNLFTLRKLSWGSDTGGQEKVELTAAEVESLRSELADLEEREAHLKAQLQHIDEVLRSARLSGYLNIRTRWAALPGEPPPIDDTEVDDWLPRFVVLHGACIFLYLLCTDISPQDSTLLSDILEVGRLPCFKRENDDIQHAFYILTRHGFRYECSSNSTIQVDSWLTALQSYTKLESDRSVPNGSIEILKTGALVVNFGSFRSLIEPCYLGLNMASHLCKSASRAARSLLSASFHSQGRAVAAASAVASITKMPLFASNYGRRTASGNGSTSWIAGALALPAAAYILQDQEVHAAELERTFIAIKPDGVQRGLISEIISRFERKGYKLVGIKVLHPTKEFAKQHYHDLKERPFFDGLCDFLSSGPVIAMVWEGQGVIVYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSFTSNSEKWVYGEN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3551 508 SUPERFAMILY PH domain-like 123 234 - -
Mtr8g3551 508 MobiDBLite consensus disorder prediction 21 45 - -
Mtr8g3551 508 Pfam Nucleoside diphosphate kinase 359 492 IPR034907 -
Mtr8g3551 508 PANTHER OS05G0595500 PROTEIN 1 248 - -
Mtr8g3551 508 Hamap Nucleoside diphosphate kinase [ndk]. 358 493 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 ProSiteProfiles PH domain profile. 120 235 IPR001849 -
Mtr8g3551 508 SMART PH_update 121 237 IPR001849 -
Mtr8g3551 508 Coils Coil 83 117 - -
Mtr8g3551 508 PRINTS Nucleoside diphosphate kinase signature 361 383 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 PRINTS Nucleoside diphosphate kinase signature 405 424 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 PRINTS Nucleoside diphosphate kinase signature 425 442 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 PRINTS Nucleoside diphosphate kinase signature 446 462 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 PRINTS Nucleoside diphosphate kinase signature 469 488 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Mtr8g3551 508 CDD PH 151 230 - -
Mtr8g3551 508 Gene3D - 105 235 IPR011993 -
Mtr8g3551 508 SUPERFAMILY Nucleoside diphosphate kinase, NDK 358 505 IPR036850 -
Mtr8g3551 508 Gene3D - 354 508 IPR036850 -
Mtr8g3551 508 ProSitePatterns Nucleoside diphosphate kinases active site. 469 477 IPR023005 -
Mtr8g3551 508 PANTHER OS05G0595500 PROTEIN 1 248 - -
Mtr8g3551 508 CDD NDPk_I 359 488 - -
Mtr8g3551 508 SMART ndk_5 358 495 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3551 Mtr-Chr8 46084921 46097388 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3551 - K00940 cam:101499802 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3551 8 46084921 46097388 Mtr8g3551 8 46084921 46097388 ECH
Mtr5g0241 5 2197465 2200693 Mtr8g3551 8 46084921 46097388 PCT