Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3459 ATGGTAACAATTAGCAGTGACGATTCACCTTCTCCTTCTCACCACCGCAAAAGGAAGAGGCTGATGAAACTGCAAGAAGATGAAGATGAAGATGATTACGTTTACGAGAAGAAGGAGAAAGAAGAAGAAGAGGAGCCGCCTTTGGAGGATGCTAAACCCATTGGCAAACCAGTTAGGGTTTCCAGAAGAGGAAAAAACAAAATCAATCATTTTCATTCCTTTGAATTTGATGGAAACCAGTACACACTTGAGGATACTGTGCTTCTTGAGCCTGATGGTAAAGATGAAAAGGCGTATGTGGCCATTATCAAGGACATTACACAATCCCCCAATGACACCTTAATGATCACAGGTCAGTGGTTTTACCGTCCATATGAAGCAGAGAAAAAAGGAGGTGGTACCTGGCAATCAAATGAGACGAGAGAGTTATATTATAGTTTCCACCAAGACGCTGTTCCTGCAGAATCTGTTAAGCATACGTGTGTGGTGCATTTTGTTCCCATACACAAACAACTTCCAAATCGTAAGCAGCATCCCGGGTTTGTGGTGCAGAAGGTGTATGACATAGAAACAATGAAATTGTGGAATCTAACTGATAAGGACTACAAGGACGATAAACAAAAAGAAATTGATGAGCTTGTTCTGAAAACCATTCAACGTTTGGGTGAACTACCTGACATTGAGACTGATGAAACTCCTGCTGGTCAGGAAGATCTGATGAAAAATAAAAGAGACTTCAAGAAAAAGAGTATTTCATCTCTTGATTTATCAAAGGAGAAGGAAGCATCTCGAAAGAGTGTCCAATCTCTGGAACCTGAAATACCAGGAAAACGTGTAGCTAATACCTCAGAGCATTATCGTGTATTAGTGAAATTTAACGCACTAACAGGAGATGCCCATCGTGACAAATGTTTGGAGACACTCCTTCAGAATGTTCAATACTTGTTTGACACCGATGACAACATGAAGAAAAAAGACAAAGGGAGTGACAATTCTGATGCTATCAACAATGGAGGAAATAGCAAAAGTTTAGAAATCGCAAATGAATGTAAAGGCAAAGTTCTGAAGAATTCCAAGCCTTTTGTCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTGTGGAGAAAGCTTCGCATGATGCATTTTCATCAGATGATCAGAAGTACAGACAAAAGCTACGACAGTTAGCATTTAATCTCAAGAACAATGCATTTCTGTTACGGCGTTTATTAAATGGAGAGCTAGAACCTTCACAAATATTGAATATGACACCTACGGAGTTGAAGGAAGGTTTGACTGCTGAGGAATTACCCAAGAATGAGCCCGATGAACAACAACACATGCAGATGACAGATGCTAGTTGCAAACTTTGCACAGAGCGTAAAGTGGGTGTAAGGGATATTATTCGTGCAGGACTTGCTGACCGATATATGCTGGAATGTATCGCCTGTGGTCATTCTTGGTCTGCCTCTTGTGATGCGGTGTCTGTGCTGACATTAGATGCATCAGATTCAAAAAGAAATGCAGGCACAGCCTCATGGGTCACTGCAAAATTTGAAGATGCTGAGAAGAAGAAGAAGCTGGTGGGTACTCATGAATCTGACGATTATGACTTCTTTATGCCGCCTGTATCCAGAAACCATTGA 1647 0.4117 MVTISSDDSPSPSHHRKRKRLMKLQEDEDEDDYVYEKKEKEEEEEPPLEDAKPIGKPVRVSRRGKNKINHFHSFEFDGNQYTLEDTVLLEPDGKDEKAYVAIIKDITQSPNDTLMITGQWFYRPYEAEKKGGGTWQSNETRELYYSFHQDAVPAESVKHTCVVHFVPIHKQLPNRKQHPGFVVQKVYDIETMKLWNLTDKDYKDDKQKEIDELVLKTIQRLGELPDIETDETPAGQEDLMKNKRDFKKKSISSLDLSKEKEASRKSVQSLEPEIPGKRVANTSEHYRVLVKFNALTGDAHRDKCLETLLQNVQYLFDTDDNMKKKDKGSDNSDAINNGGNSKSLEIANECKGKVLKNSKPFVWPDVAVPAVVAVEKASHDAFSSDDQKYRQKLRQLAFNLKNNAFLLRRLLNGELEPSQILNMTPTELKEGLTAEELPKNEPDEQQHMQMTDASCKLCTERKVGVRDIIRAGLADRYMLECIACGHSWSASCDAVSVLTLDASDSKRNAGTASWVTAKFEDAEKKKKLVGTHESDDYDFFMPPVSRNH* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3459 548 MobiDBLite consensus disorder prediction 39 57 - -
Mtr8g3459 548 MobiDBLite consensus disorder prediction 257 278 - -
Mtr8g3459 548 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 8 535 - -
Mtr8g3459 548 Pfam Transcription factor S-II (TFIIS), central domain 296 444 IPR003618 GO:0006351
Mtr8g3459 548 ProSiteProfiles TFIIS central domain profile. 300 456 IPR003618 GO:0006351
Mtr8g3459 548 MobiDBLite consensus disorder prediction 320 342 - -
Mtr8g3459 548 Gene3D - 278 430 IPR036575 GO:0006351
Mtr8g3459 548 Gene3D - 10 187 IPR043151 -
Mtr8g3459 548 SUPERFAMILY Elongation factor TFIIS domain 2 294 429 IPR036575 GO:0006351
Mtr8g3459 548 ProSiteProfiles BAH domain profile. 79 198 IPR001025 GO:0003682
Mtr8g3459 548 Pfam BAH domain 80 193 IPR001025 GO:0003682
Mtr8g3459 548 MobiDBLite consensus disorder prediction 1 59 - -
Mtr8g3459 548 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 8 535 - -
Mtr8g3459 548 SMART BAH_4 79 198 IPR001025 GO:0003682
Mtr8g3459 548 SMART mid_6 298 438 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3459 Mtr-Chr8 45087855 45092987 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3459 - - cam:101501082 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3459 8 45087855 45092987 Mtr8g3459 8 45087855 45092987 ECH
Mtr5g0289 5 2676152 2681358 Mtr8g3459 8 45087855 45092987 PCT