Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0289 ATGGTGAATCGGCGCTTCACTCAGGTCGCCACAAGCGACGACGAAGAAGACGAAGCACCACCGCCACCTCAGCATTCAAAGCTTCGAAAACGAAAGAAGATGAAGCTTATAGACGAAGAAGACGACGAAGAATCCAACGACAATAGCAATAACGATAGCGATGCGAAGGAAGAAGAGAAAAAGGATTCACCTCAAACTCCAGAGGATGCAAAGCCGATTGGTGAACCACTTAGGGTTTCGGGGAAAGGAAGAGGGAGGAAGAGACATTACGAATCGTTTGAGTTTGATGGAAATCAATATTCTCTTGAGGATCCTGTAATGCTTGTGCCTGAGGATAAAGAACAAAAACCATATGTTGCTATAATCAAGGACATTATACAGTACTTTAGTGGCAGCATAATGGTGGCTGGACAGTGGTTTTATCGTCCTGAAGAAGCTGAAAAAAAAGGCGGTGGAAGCTGGAAATCGTGTGATACAAGGGAGCTTTTTTATAGTTTTCACCGTGATGAGGTTCCTGCAGAGTCTGTTATGCATAAGTGCGTGGTGCATTTTGTGCCCTTGAACAAACAGTTTCCGAAACGTAAGCAACATCCTGGCTTCATCGTACAAAGGGTGTATGACACTTTGGAAAGGAAACTCTGGAAGCTGACTGATAAGGACTATGAGGATGTTAACCAGCAAGAAATTGACGAGCTTGTTCAGAAAACTATAAAACGCATCGGTGATCTACTTGACATTGAGCCTGAAGAAGCCCCTCCTGCTGTTCAGGAGGACATGACAAAAAATAAAAGAAGCTTAAGGAGAAAGAGCATTTCTCCCATTGATGTTTCAAGGGAGGAGGAAGGAGTTTCTAAGAGTGACCAACATTCCAAGCCTGAAACACCTGGGAGTTGTGTTAATAATGACTCAGAGCATCATCGCATATTAGTAAATTTCAATGCACTAACTGGAAACATTCATCGCGACAAATGGTTGGAGAGGTTGCTTCAACACATTCAGTACATGTGTAATAGTGATGATAGTACAGAAAAGGAAAAAGGATCAGGAAATGCCGAGTCTGATGAAATCAAGAATAAAAGCAATGATAGAACTTCAGAAATAGCAAATGACTCTCAGAACAAGGGTCAGAAGAGTTCCGAGTCTTTTGTGTGGCCAGATGCTGCTGTTTCAGCCATAGTTGCTCTTGAAAAAGCTTCCCATGAGGCTTTTTCAACAGATTTTCAGAAGTATAACCAAAAGCTGCGGCAATTAGATTTTAATCTCAAGAACAATGCATTGCTAGCACGCCGTCTGTTAAATGGAGAGTTGAAACCTTCTAAAATTTTGAATATGACACCCATTGAATTAAAGGAGGGTTTGACTGCTGAGGAAAAAACCAAGAAGGAGCCTGATGAGAAACAACACATGCAAATGACAGATGCCCGCTGTTCAAGATGCACGGATTCTAAGGTGGGTTTGAGGGAGATTATCCATGCTGGACATGATGACCGTTATCAGCTGGAATGTGTTGCCTGTGGTAATTCCTGGTATGCCTCCCGGAATGAGGTGTCTGCACTGACCATAGATGCATTGGATTCAAAGAGAAGCATGAGCACAACACCATCTTCCACCGCAAAATTTGAAGATGTTCAGAAGAAGCTGGTGAGTCCCCGTGGCTCTGAAAACTCAGCTGATGACCTCTCTAAGAGAACAGGTGAACCATCTATGCCTGATTTGGCCGCCCAGAAATCATTTGGCAAGCCCAAGAAAGATGACAATGTTGAGGCCAATAGACAGGCTGATAAGGAATGA 1791 0.4316 MVNRRFTQVATSDDEEDEAPPPPQHSKLRKRKKMKLIDEEDDEESNDNSNNDSDAKEEEKKDSPQTPEDAKPIGEPLRVSGKGRGRKRHYESFEFDGNQYSLEDPVMLVPEDKEQKPYVAIIKDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVVHFVPLNKQFPKRKQHPGFIVQRVYDTLERKLWKLTDKDYEDVNQQEIDELVQKTIKRIGDLLDIEPEEAPPAVQEDMTKNKRSLRRKSISPIDVSREEEGVSKSDQHSKPETPGSCVNNDSEHHRILVNFNALTGNIHRDKWLERLLQHIQYMCNSDDSTEKEKGSGNAESDEIKNKSNDRTSEIANDSQNKGQKSSESFVWPDAAVSAIVALEKASHEAFSTDFQKYNQKLRQLDFNLKNNALLARRLLNGELKPSKILNMTPIELKEGLTAEEKTKKEPDEKQHMQMTDARCSRCTDSKVGLREIIHAGHDDRYQLECVACGNSWYASRNEVSALTIDALDSKRSMSTTPSSTAKFEDVQKKLVSPRGSENSADDLSKRTGEPSMPDLAAQKSFGKPKKDDNVEANRQADKE* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0289 596 SMART mid_6 354 459 IPR003618 GO:0006351
Mtr5g0289 596 MobiDBLite consensus disorder prediction 254 288 - -
Mtr5g0289 596 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 590 - -
Mtr5g0289 596 Gene3D - 338 451 IPR036575 GO:0006351
Mtr5g0289 596 MobiDBLite consensus disorder prediction 49 68 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 339 381 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 527 596 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 577 596 - -
Mtr5g0289 596 Pfam BAH domain 99 215 IPR001025 GO:0003682
Mtr5g0289 596 MobiDBLite consensus disorder prediction 454 473 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 527 542 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 248 302 - -
Mtr5g0289 596 SMART BAH_4 98 217 IPR001025 GO:0003682
Mtr5g0289 596 Gene3D - 5 199 IPR043151 -
Mtr5g0289 596 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 590 - -
Mtr5g0289 596 CDD BAH_plant_3 80 226 - -
Mtr5g0289 596 ProSiteProfiles TFIIS central domain profile. 320 477 IPR003618 GO:0006351
Mtr5g0289 596 SUPERFAMILY Elongation factor TFIIS domain 2 315 450 IPR036575 GO:0006351
Mtr5g0289 596 MobiDBLite consensus disorder prediction 339 364 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 365 380 - -
Mtr5g0289 596 Pfam Transcription factor S-II (TFIIS), central domain 316 468 IPR003618 GO:0006351
Mtr5g0289 596 MobiDBLite consensus disorder prediction 454 472 - -
Mtr5g0289 596 MobiDBLite consensus disorder prediction 1 86 - -
Mtr5g0289 596 ProSiteProfiles BAH domain profile. 98 217 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0289 Mtr-Chr5 2676152 2681358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0289 - - cam:101495294 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0289 5 2676152 2681358 Mtr5g0289 5 2676152 2681358 ECH
Mtr5g0289 5 2676152 2681358 Mtr8g3459 8 45087855 45092987 PCT