Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3379 ATGGTAGTTTCTTATCATGAAGAACAACCGCATAGGAAGCCAATGGAGGAACATGAACAAACTGGAATTACTAGTACTACTAGTACTAGTTTTATTGATGAACAAGAACAAGAAGAAGCATTGATCGCTCTCGTCAACCACCGTTGTCGTCAAGTCAAAAACCTCCTTGACCAGCTTAAGAAAGCAGAAGAGAAGTACCGAAATTCTAAATCCAAGTTGGCTCTTTTTCAAGGTAAGAAAAATGGGAGTTTATTAGATGCTGGAAAGACAAAGCATGGATCAAACAGTCTTATTCGTAAAAATGAAACTCCTTCCAAAATTCTTCATCAATCAAAGGCTCAACATTTTAATCCAAAAACATCACAATGCATACAGTTACCAGATTCTGCAAAAGCTTTAATAAATTATAACGCTGGAGCTAACCTTACTCAGAGATTTCCTATCGAGCTGGATAACAAAGGAACAAAAAGGAAGTATGAAATAAAGGAGCAAAAGTATTTGGTTTCTTTGATAGGTACAAGTTCTTCAGCACGATCTGTGAACTGTCAAATGACCAGCTCCATACCAAGTCTACACAAGAAGAGATTGAGAAGTCTTGCTCTGTGTCCTTTGAATGATCAACATTTTGTGACTAGTGCTTTGGATGGAGTGATCCGCTTGTGGGAAGTTCAATCTCGAGGATTAGGAGCCAGACTGCTCAGCACTACTGATTGCGCATCTGCAGAGCAGAAGAGATGGCCGGAAGATATAGCTTGGCATCCAGAAGGAAAGAGCCTTTTTTCAGTATACAGTGCTGATAGTCCTGACTCTCAAGTATCAGTTACAAATTTTAAAGATGGTGAAAGGAGTGGACAAGTCAATTTCTTACAAGACAAGCCTCATGTTAAGGGTGCTATCAATAGCATTGTTTTTCTGCCTTGGGAATATTCCAGCTTTGTTACAGCAGGAACTGACCATACTGTCATGCTATGGAGTGAGAATGATGAGAAAAAATGGAAGTCAGAGCCATTGCATAGGAATATTCATACTTCTGCTGTCATGGGAGTTGCTGGTGTTCAGCACAAGAAAATTGTGCTGTCTGTTGGTCAAGACAAGAGAATTTTGGGGTACAATGCTCACGTGGGAAGACAAGATTTCATACATCAAGTTGATAGTAAATGCTTGAGTATATTGCCAAATCCAGTTGACTTCAATTTGTTCATGGTTCAAACAGGGACTCGTGAAAAGCAACTTCGATTATTTGATATTAGATTGAAGCTGAAAGAGGTTCATGCATTTGGGTGGAAGCAAGAAAGAAGGGATACACAATCAGCTCTGGTAAATCAGGATTGGTCTCCCAATGGATTATACATAACATCTGGTTCAGATGATCCATTGATTCACATATTTGATATTAGATATAATGGTCATGAACCTTCACAATCTATCAAAGCTCATCAGAAAAGAGTCTTCAGAGCCATGTGGCATCACTCTCGTCCACTTCTCATTTCCATATCATCTGATTCCAACATTGGATTCCACAAGCGTGTGCAGTGA 1536 0.3932 MVVSYHEEQPHRKPMEEHEQTGITSTTSTSFIDEQEQEEALIALVNHRCRQVKNLLDQLKKAEEKYRNSKSKLALFQGKKNGSLLDAGKTKHGSNSLIRKNETPSKILHQSKAQHFNPKTSQCIQLPDSAKALINYNAGANLTQRFPIELDNKGTKRKYEIKEQKYLVSLIGTSSSARSVNCQMTSSIPSLHKKRLRSLALCPLNDQHFVTSALDGVIRLWEVQSRGLGARLLSTTDCASAEQKRWPEDIAWHPEGKSLFSVYSADSPDSQVSVTNFKDGERSGQVNFLQDKPHVKGAINSIVFLPWEYSSFVTAGTDHTVMLWSENDEKKWKSEPLHRNIHTSAVMGVAGVQHKKIVLSVGQDKRILGYNAHVGRQDFIHQVDSKCLSILPNPVDFNLFMVQTGTREKQLRLFDIRLKLKEVHAFGWKQERRDTQSALVNQDWSPNGLYITSGSDDPLIHIFDIRYNGHEPSQSIKAHQKRVFRAMWHHSRPLLISISSDSNIGFHKRVQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3379 511 MobiDBLite consensus disorder prediction 1 24 - -
Mtr8g3379 511 Gene3D - 151 332 IPR015943 GO:0005515
Mtr8g3379 511 MobiDBLite consensus disorder prediction 1 19 - -
Mtr8g3379 511 SUPERFAMILY WD40 repeat-like 194 506 IPR036322 GO:0005515
Mtr8g3379 511 Coils Coil 42 79 - -
Mtr8g3379 511 Pfam WD domain, G-beta repeat 441 464 IPR001680 GO:0005515
Mtr8g3379 511 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 225 IPR001680 GO:0005515
Mtr8g3379 511 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 18 508 - -
Mtr8g3379 511 SMART WD40_4 179 222 IPR001680 GO:0005515
Mtr8g3379 511 SMART WD40_4 427 464 IPR001680 GO:0005515
Mtr8g3379 511 SMART WD40_4 469 508 IPR001680 GO:0005515
Mtr8g3379 511 SMART WD40_4 333 371 IPR001680 GO:0005515
Mtr8g3379 511 SMART WD40_4 285 325 IPR001680 GO:0005515
Mtr8g3379 511 Gene3D - 333 510 IPR015943 GO:0005515
Mtr8g3379 511 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 18 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3379 Mtr-Chr8 44279292 44284613 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3379 - - gmx:100799587 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3379 8 44279292 44284613 Mtr8g3379 8 44279292 44284613 ECH
Mtr8g3379 8 44279292 44284613 Mtr3g3465 3 48469360 48475109 PCT