Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3465 ATGGAAGAAGAAGATATCGAAATCACGAGCAGAGAAGAACAAGAAGAAGCATTAGTCGCTTTAATCGAACATCGAACCCGCGAAGTTAACAATCTCCGCCACCGTCTCGCCTATACCAAAAATCAGCTTGATGATGCGGAAAAGAGATTAAAAGATTCAGAATCCAAATTGGCTCGTCTTCGAGGTCAAACAACTAAAAAAATAACTAACTCAGATGATGATAATGGAACTGTAGCTGTCAAGAAAGAGCGTAGATCAAACAGTCCTATTGATAGGAATGAACGTTCTTATAAAAGTAATAAGCAATCTAAGACTGAACTTGTTATTCCTGCTGTTACACCAAAGATTTCACGGTCTTCAGGAAAAGGTTCTGTTTCTGAAGTAGCTGTTTCGTCCGTTCATACTTCTTCGGTTAGTGGAGGGAAATCAGTTAAGTCCAAAATAGATCAGCAAAATGTTGAAGGGAAGGATAAAGGGACAAAAAGAAAATTTGAACAAAAAGAACACCAGGAATTGATTCCTTTAATACGCAAGAGTTCATCAAAGAACTTAGTACACTGCCAATCAAGCAACCACATCTCAAGTCAGCACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCCGCTAATGATCAGCTTTTTGCAACCAGTGCTTTGGATGGATTGGTCAACTTCTGGAAAGTCCAAGCCAAAGGATCATCAGCCTCTCTGCTTAACTCTACTGATTGTGCATCCCAAAAACAGAGGAGATGGCCAGAAGATATAGCTTGGCACCCGGAAGGAAACAGGCTCTTTTCAGTATATACTGCTGATGGTGGAGACTCACAAATATCAGTTACAAATTGGAATAAAATTAAAGGGGTAGAACGTGTGACATTCTTAGAGGACAAGCCCCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAGATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTGTACTTTGGCGCGAGCAGGATGATGAGGACAAATGGAAGCCAAGACCATTGCACAGGAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTATCTGCAGGTGCAGACAGGAGAATATTTGGGTTTGATGTTGGTGCAGGCAGAGCAGAGTTCACTCATCAGATTGATAGTAAATGCATGAGTGTCGTTCCCAATCCGGTCGACTTCAACTTGTTTATGGTTCAAACAGGGACTCATGAGAAGCAGCTTCGATTATTTGATATTAGATTGAGGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGAATCTCAATCAGCTCTGATTAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCAGCGGATCCTGTGATTCACATATTTGATATAAGATATAATCTTAACAGGCCGTCCCAATCTATAAAAGCTCACCAGAAAAGAGTCTTTGGAGCCTTGTGGCTTCAGTCTATTCCTCTTCTCATATCTATATCATCTGATCTCAACATTGGGTTGCACACCCTGATGAAGTAA 1554 0.4112 MEEEDIEITSREEQEEALVALIEHRTREVNNLRHRLAYTKNQLDDAEKRLKDSESKLARLRGQTTKKITNSDDDNGTVAVKKERRSNSPIDRNERSYKSNKQSKTELVIPAVTPKISRSSGKGSVSEVAVSSVHTSSVSGGKSVKSKIDQQNVEGKDKGTKRKFEQKEHQELIPLIRKSSSKNLVHCQSSNHISSQHKRKLRSIALCPANDQLFATSALDGLVNFWKVQAKGSSASLLNSTDCASQKQRRWPEDIAWHPEGNRLFSVYTADGGDSQISVTNWNKIKGVERVTFLEDKPHVKGIINGIVFMPWEDTCFVTGGSDHAVVLWREQDDEDKWKPRPLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVGAGRAEFTHQIDSKCMSVVPNPVDFNLFMVQTGTHEKQLRLFDIRLRRTELHAFGWKQESSESQSALINQAWSPDGLYITSGSADPVIHIFDIRYNLNRPSQSIKAHQKRVFGALWLQSIPLLISISSDLNIGLHTLMK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3465 517 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Mtr3g3465 517 MobiDBLite consensus disorder prediction 134 166 - -
Mtr3g3465 517 SUPERFAMILY WD40 repeat-like 199 511 IPR036322 GO:0005515
Mtr3g3465 517 Pfam WD domain, G-beta repeat 447 470 IPR001680 GO:0005515
Mtr3g3465 517 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 515 - -
Mtr3g3465 517 MobiDBLite consensus disorder prediction 149 166 - -
Mtr3g3465 517 Gene3D - 126 387 IPR015943 GO:0005515
Mtr3g3465 517 SMART WD40_4 181 227 IPR001680 GO:0005515
Mtr3g3465 517 SMART WD40_4 433 470 IPR001680 GO:0005515
Mtr3g3465 517 SMART WD40_4 287 330 IPR001680 GO:0005515
Mtr3g3465 517 SMART WD40_4 475 514 IPR001680 GO:0005515
Mtr3g3465 517 SMART WD40_4 339 377 IPR001680 GO:0005515
Mtr3g3465 517 Coils Coil 29 63 - -
Mtr3g3465 517 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 515 - -
Mtr3g3465 517 MobiDBLite consensus disorder prediction 134 148 - -
Mtr3g3465 517 Gene3D - 388 515 IPR015943 GO:0005515
Mtr3g3465 517 MobiDBLite consensus disorder prediction 76 101 - -
Mtr3g3465 517 MobiDBLite consensus disorder prediction 54 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3465 Mtr-Chr3 48469360 48475109 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3465 - - gmx:100799587 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3465 3 48469360 48475109 Mtr3g3465 3 48469360 48475109 ECH
Mtr8g3379 8 44279292 44284613 Mtr3g3465 3 48469360 48475109 PCT