Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3349 ATGTCTCACGATGACTCTTCAAACCAAACAACACCACATGTATATGTTCCACAACCCTTATATTCACACCCTCAACCTCAGAAGAAAAACAACCCTGTCACTCTTCAATCTCATCTCTCCAAACCTAATACCGAACAAGAACAAACTTTCAACAAACCTTCTGATAATATTCCAAACAATGAAAACAACTCACTCCAAGAGCTTCAAAATCTCATTCAACAAGCATTCAATAACCATGCCTTCTCTGCTCCACCACTCATTAAAGAACAAAAACAATCCACCACCACCACCGTAGCTGCTGAACCTGCACAAGAAAACAAATACCAATTAGAAGATAAGAAGGAAAATGTAGTGTCTTCTGTGGAGGATGATGGAGCAAAAACTGTGGAGGCTATTGAAGAAAGCATTGTTGCGGTTTCTGCATCTGTTCCTCCAGAGCAAAAACCTGTTGTCGAGAAAGTTGAAGCGTCATTGCCATTACCACCTGAACAAGTATCCATTTATGGGATACCACTCCTTGCTGACGAAACAAGTGACGTAATTCTGTTGAAATTTCTGCGTGCAAGAGATTTTAAGGTCAAAGAGGCTTTCACAATGATCAAGAACACAATTCTCTGGAGAAAAGAATTTGGAATAGAGGAGTTAATGGATGAGAAACTGGGTGATGAATTGGAGAAAGTGGTTTACATGCATGGATTTGATAAGGAAGGTCACCCTGTATGTTATAACATATATGGTGAATTTCAGAACAAGGAATTGTATAACAAGACTTTTTCTGATGAAGAGAAGAGACATAATTTCCTTAAATGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAATTTGGATTTTAACCATGGTGGTGTTTGCACCATTGTTCATGTCAATGATCTTAAGGATTCTCCTGGACCAGGTAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAACTGTTTCAGGACAATTACCCTGAATTTGTGGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACTTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACCCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAGTCAACTGAGACCCTTTTGAGCTACATAGCTCCAGAGCAACTCCCTGTGAAGTATGGTGGATTGAGTAAAGATGGTGAATTTGGAAATTCAGATTCTGTTACTGAGATCACAATAAGACCAGCATCAAAGCATACTGTGGAATTTCCTGTTACTGAGAAATGTTTACTGTCTTGGGAGGTGAGAGTGATAGGGTGGGAAGTAAGGTATGGTGCAGAATTTGTACCAAGCAATGAAGGAAGCTATACTGTAATTGTCCAAAAGGCTAGAAAAGTGGCTTCATCAGAAGAAGCAGTGCTTTGCAACAGTTTTAAAATTAATGAACCTGGTAAAGTTGTTCTTACCATTGACAACACAAGTTCTAGGAAGAAAAAGCTCTTGTACCGCTTGAAGACCAAGACTTCACTCTCTGACTGA 1512 0.3988 MSHDDSSNQTTPHVYVPQPLYSHPQPQKKNNPVTLQSHLSKPNTEQEQTFNKPSDNIPNNENNSLQELQNLIQQAFNNHAFSAPPLIKEQKQSTTTTVAAEPAQENKYQLEDKKENVVSSVEDDGAKTVEAIEESIVAVSASVPPEQKPVVEKVEASLPLPPEQVSIYGIPLLADETSDVILLKFLRARDFKVKEAFTMIKNTILWRKEFGIEELMDEKLGDELEKVVYMHGFDKEGHPVCYNIYGEFQNKELYNKTFSDEEKRHNFLKWRIQFLEKSIRNLDFNHGGVCTIVHVNDLKDSPGPGKWELRQATKQALQLFQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFGNSDSVTEITIRPASKHTVEFPVTEKCLLSWEVRVIGWEVRYGAEFVPSNEGSYTVIVQKARKVASSEEAVLCNSFKINEPGKVVLTIDNTSSRKKKLLYRLKTKTSLSD* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3349 503 SUPERFAMILY CRAL/TRIO N-terminal domain 56 218 IPR036273 -
Mtr8g3349 503 ProSiteProfiles GOLD domain profile. 396 497 IPR009038 -
Mtr8g3349 503 MobiDBLite consensus disorder prediction 1 62 - -
Mtr8g3349 503 Gene3D - 151 209 - -
Mtr8g3349 503 PRINTS Cellular retinaldehyde-binding protein signature 181 203 - -
Mtr8g3349 503 PRINTS Cellular retinaldehyde-binding protein signature 344 363 - -
Mtr8g3349 503 SMART CRAL_TRIO_N_2 178 203 IPR011074 -
Mtr8g3349 503 PANTHER PATELLIN-3 PROTEIN 2 503 - -
Mtr8g3349 503 MobiDBLite consensus disorder prediction 1 16 - -
Mtr8g3349 503 SUPERFAMILY CRAL/TRIO domain 227 389 IPR036865 -
Mtr8g3349 503 Pfam CRAL/TRIO domain 226 386 IPR001251 -
Mtr8g3349 503 SMART sec14_4 222 389 IPR001251 -
Mtr8g3349 503 Gene3D - 213 401 IPR036865 -
Mtr8g3349 503 MobiDBLite consensus disorder prediction 23 62 - -
Mtr8g3349 503 CDD SEC14 223 387 IPR001251 -
Mtr8g3349 503 Pfam CRAL/TRIO, N-terminal domain 176 202 IPR011074 -
Mtr8g3349 503 PANTHER PATELLIN-1 2 503 IPR044834 GO:0008289
Mtr8g3349 503 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 397 496 IPR036598 -
Mtr8g3349 503 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 217 392 IPR001251 -
Mtr8g3349 503 Gene3D GOLD domain 402 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3349 Mtr-Chr8 44022814 44026028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3349 182 381 Acyl Lipid Metabolism Gene Families AT1G55840 27.570 5.71e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3349 - - gmx:100788197 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3349 8 44022814 44026028 Mtr8g3349 8 44022814 44026028 ECH
Mtr8g3349 8 44022814 44026028 Mtr3g3420 3 48086369 48089389 PCT