Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3420 ATGGCAGAGGAATCTCCAAAGATAGCCACAACTCAAGAGACAGTGCCTCTTGCTGAGGAGCAAGTGGTGGTCACTCAAAAAACAGAATCCCCTGTTCCAGCTGACAAAGAATCTGATCAGCCCAAGCCCAACCCAGAGCCCGTTGAAAACAACACTACTGAGACGGAGGAGGTATCAAAGCCCAGTGGTGATGACAAAATTCCAGAGTCTGGTTCTTTCAAAGAAGAGAGTACTATTGTTGGTGAGCTACCTGAAGCTGAGAAGAAAGCACTTGCAGAGCTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTGCACCAGCTTCAACTACTCCAAGCCCAGTTAAAGAACAAAAGCCCGAGCCCACACCAGAAGCACCTGCTGAAGAGACCAACAAGAAAGATGAGCAGGTTTCTGAAACAGAATCTGTTGTTGCTGTTACTACTGCAGATGATGACGTATCAACAACACCACCACCACCACCAACTGAAGCTGAAGCTGAAGCTGAACAACCAAAAGAAGAAGTAGAAAAGAAAGAAACAGAGGTTGCTGCTTCTTCTGTAGATGAAGATGGAGCGAAAACAGTTGAAGCAATTGAAGAATCTGTTGTAGCTGTAGCTTCATCAGTTCCAGAGGAACCAAAGGTGGTGGAAGCTTCTTCACCGGAACAACAACAACCAGAAGAGGTTTCAATATGGGGGATACCACTCCTCGCAGACGATAGAACCGACGTGATTCTGTTGAAGTTTCTCCGAGCCAGAGACTTCAAAGTGAAAGAAGCATTCACAATGATCAAGAACACTATCCGTTGGAGAAAAGAGTTCAAAATCGAAGAGTTGTTATTAGATGAAAACTTAGGTGATGAATATTTAGAGAAAACTGTTTACATGCATGGCTATGATAAAGAAGGACACCCTGTTTGTTATAATATTTATGGAGAGTTTGATAACAAGGAGGTTTATAAGAAAACATTTTCAGATGAAGAGAAGAGAGAAAGATTCTTGAAATGGAGAATTCTGGTCTTGGAGAAGAGTATAAGGAAATTGGATTTTACCCCTGGTGGTATATGCACCATTGTTCAGGTTAATGATCTTAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAAGATAATTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTTTTTGCTGGGCCTTCCAAATCAGCTGAAACTCTTCTAAGTTACATAGCTCCGGAGCAACTTTCAGTCAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACATCGTGGAATTTCCAGTTACTGAGAACTGTTTACTCTCTTGGGAGCTAAGAGTAATTGGGTGGGACATAAGCTATGGTGCAGAGTTTGTACCAAGTTCAGAAGGAAGCTACACTGTGATAATCCAGAAGACTAGAAAAATTGCTTCATCAGAAGAACCAGTGCTTTGTAACAACTACAAAATTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAATTCAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCAACTTCTGATTAA 1722 0.4152 MAEESPKIATTQETVPLAEEQVVVTQKTESPVPADKESDQPKPNPEPVENNTTETEEVSKPSGDDKIPESGSFKEESTIVGELPEAEKKALAELKQLIQEALNKHEFSAPASTTPSPVKEQKPEPTPEAPAEETNKKDEQVSETESVVAVTTADDDVSTTPPPPPTEAEAEAEQPKEEVEKKETEVAASSVDEDGAKTVEAIEESVVAVASSVPEEPKVVEASSPEQQQPEEVSIWGIPLLADDRTDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFKIEELLLDENLGDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKRERFLKWRILVLEKSIRKLDFTPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLSYIAPEQLSVKYGGLSKDGEFGITDAVTEITVRPAAKHIVEFPVTENCLLSWELRVIGWDISYGAEFVPSSEGSYTVIIQKTRKIASSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3420 573 MobiDBLite consensus disorder prediction 103 197 - -
Mtr3g3420 573 Gene3D GOLD domain 472 567 - -
Mtr3g3420 573 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 468 567 IPR036598 -
Mtr3g3420 573 MobiDBLite consensus disorder prediction 170 197 - -
Mtr3g3420 573 Pfam CRAL/TRIO domain 297 456 IPR001251 -
Mtr3g3420 573 MobiDBLite consensus disorder prediction 7 28 - -
Mtr3g3420 573 SUPERFAMILY CRAL/TRIO domain 297 459 IPR036865 -
Mtr3g3420 573 SMART sec14_4 292 459 IPR001251 -
Mtr3g3420 573 CDD SEC14 294 457 IPR001251 -
Mtr3g3420 573 Pfam CRAL/TRIO, N-terminal domain 230 270 IPR011074 -
Mtr3g3420 573 MobiDBLite consensus disorder prediction 125 143 - -
Mtr3g3420 573 Gene3D - 165 471 IPR036865 -
Mtr3g3420 573 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 286 462 IPR001251 -
Mtr3g3420 573 PANTHER PATELLIN-3 PROTEIN 22 573 - -
Mtr3g3420 573 PRINTS Cellular retinaldehyde-binding protein signature 249 271 - -
Mtr3g3420 573 PRINTS Cellular retinaldehyde-binding protein signature 414 433 - -
Mtr3g3420 573 PANTHER PATELLIN-1 22 573 IPR044834 GO:0008289
Mtr3g3420 573 MobiDBLite consensus disorder prediction 1 81 - -
Mtr3g3420 573 SMART CRAL_TRIO_N_2 246 271 IPR011074 -
Mtr3g3420 573 SUPERFAMILY CRAL/TRIO N-terminal domain 72 286 IPR036273 -
Mtr3g3420 573 MobiDBLite consensus disorder prediction 58 72 - -
Mtr3g3420 573 ProSiteProfiles GOLD domain profile. 466 567 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3420 Mtr-Chr3 48086369 48089389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g3420 250 436 Acyl Lipid Metabolism Gene Families AT1G55840 30.151 9.15e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3420 - - gmx:100805585 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3420 3 48086369 48089389 Mtr3g3420 3 48086369 48089389 ECH
Mtr8g3349 8 44022814 44026028 Mtr3g3420 3 48086369 48089389 PCT