Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3346 ATGTTGAATCTTTTTAGGGTTTATCAGTGCATCCTTGGTTTCATCCTTGTCATCTCCATCTTCATATCACTTTTTCAAGAAATAAAGATGGCAGCCGAGCTAGTCAATGCTGCAACAAGTGAGAAACTGTCCGAAATTGATTGGATGAAAAATATTGAAATCTCTGAATTAGTTGCTCGTGATCAAAGGAAAGCTAAAGATGTTGTCAAAGCTATTAAAAAGAGACTTGGTAACAAGAACCCCAATGCTCAACTTTATGCTGTCATGTTGCTGGAAATGTTGATGAACAACATAGGAGATCATATTAATGAGCAGGTGGTTCGTGCAGAAGTTATTCCTATTCTTGTGAAAATTGTAAAGAAAAAGTCAGATTTGCCTGTCAGGGAGCAAATATTTCTCCTACTAGATGCAACACAAACATCTCTTGGCGGTGCTTCGGGAAAATTTCCGCAGTATTATAAGGCATATTATGACTTAGTGAGTGCCGGGGTACAATTTCCTCAAAGAGCTCAAGTTGTCCAATCAAATCGTCCTAGTTTACAACCAAATACGACTAATAATGTACCAAAAAGAGAGCCATCCCCACTTAGACGTGGAAGGGTTGCTCAGAAAGCAGAATCCAACACTGTTCCTGAATCTAGAATTATCCAAAAGGCTAGTAATGTATTGGAAGTTCTAAAAGAAGTTCTTGATGCTGTTGATGCCAAACATCCTCAGGGAGCAAGAGATGAATTCACCCTTGACCTTGTTGAGCAATGTTCATTTCAAAAGCAGAGGGTAATGCATCTTGTGATGGCTTCTAGAGACGAGAGGATAGTTTCCCGAGCAATCGAAGTGAATGAGCAACTTCAGAAAGTTCTAGAGAGACATGATGACCTTCTTTCTAGCAAAGATACAACAACTGTGAATCACTTTGACCATGAAGAAGCAGAGGAGGAGGAAGAACCTGAACAGTTATTCAGAAGATTACGCAAAGGAAAAGCTTGTGTAAGGCCTGAAGATGAAGAAACTAAACCTCAGTTCCCTCAATTGAGTTTACTTGAAGAGAGACTCAACCGTCCACTAATAAGACCACTCTCTTTGGAACCATCTCAAGAAGCTAATGGTTGTCTTGTACCTGCCATTGTTCCTCCTCCAAGTGCAAAACACAATGGGGAGCTTCCTCCTGTTGCAATTCCGCCGCCACCTTTGAAGCACGTCGAGAGAGAAAAATATTTTCAGCATAATAAGGACAGTGGCACTTTGGCTAGCCACATCAGAGGCCTCTCTTTACATAGTCGCAATGGCAGTAGTTCAGAGTGGAAGCTTTGA 1311 0.4088 MLNLFRVYQCILGFILVISIFISLFQEIKMAAELVNAATSEKLSEIDWMKNIEISELVARDQRKAKDVVKAIKKRLGNKNPNAQLYAVMLLEMLMNNIGDHINEQVVRAEVIPILVKIVKKKSDLPVREQIFLLLDATQTSLGGASGKFPQYYKAYYDLVSAGVQFPQRAQVVQSNRPSLQPNTTNNVPKREPSPLRRGRVAQKAESNTVPESRIIQKASNVLEVLKEVLDAVDAKHPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIEVNEQLQKVLERHDDLLSSKDTTTVNHFDHEEAEEEEEPEQLFRRLRKGKACVRPEDEETKPQFPQLSLLEERLNRPLIRPLSLEPSQEANGCLVPAIVPPPSAKHNGELPPVAIPPPPLKHVEREKYFQHNKDSGTLASHIRGLSLHSRNGSSSEWKL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3346 436 Gene3D - 26 165 IPR008942 -
Mtr8g3346 436 MobiDBLite consensus disorder prediction 410 436 - -
Mtr8g3346 436 Gene3D - 211 303 IPR038425 -
Mtr8g3346 436 Pfam GAT domain 222 295 IPR004152 GO:0035091|GO:0043130
Mtr8g3346 436 MobiDBLite consensus disorder prediction 173 210 - -
Mtr8g3346 436 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 30 433 - -
Mtr8g3346 436 CDD VHS 31 159 - -
Mtr8g3346 436 PANTHER TOM1-LIKE PROTEIN 30 433 IPR044836 GO:0035091|GO:0043130|GO:0043328
Mtr8g3346 436 ProSiteProfiles GAT domain profile. 207 295 IPR004152 GO:0035091|GO:0043130
Mtr8g3346 436 SMART VHS_2 31 163 IPR002014 GO:0035091|GO:0043130
Mtr8g3346 436 Coils Coil 216 236 - -
Mtr8g3346 436 Pfam VHS domain 33 141 IPR002014 GO:0035091|GO:0043130
Mtr8g3346 436 SUPERFAMILY ENTH/VHS domain 33 169 IPR008942 -
Mtr8g3346 436 MobiDBLite consensus disorder prediction 173 191 - -
Mtr8g3346 436 SUPERFAMILY GAT-like domain 215 295 - -
Mtr8g3346 436 MobiDBLite consensus disorder prediction 299 319 - -
Mtr8g3346 436 MobiDBLite consensus disorder prediction 409 436 - -
Mtr8g3346 436 ProSiteProfiles VHS domain profile. 38 167 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3346 Mtr-Chr8 43994717 44000795 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3346 - - gmx:100802949 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3346 8 43994717 44000795 Mtr8g3346 8 43994717 44000795 ECH
Mtr8g3346 8 43994717 44000795 Mtr3g3416 3 48057431 48063654 PCT