Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3416 ATGGCAGCTGAGTTAGTCAATGCTGCAACAAGCGAGAAATTGGCCGAAACTGATTGGGCAAAAAATATTGAAATATGTGAGTTGGTTGCACGTGATAAAAGGCAAGCTAGAGATGTTGTTAAAGCTATCAAGAAGAGACTCGGTAGCAAACACCCTGACGCCCAACTTTATGCTGTCACGTTGCTGGAGATGTTGATGAACAATACTGGAGAGCATATTCATGAGCAGGTGATTGATATCGGAATTATTCCCATTCTTGTGAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGAGGATATTTCTTCTACTAGATGCCACACAATCATCCCTTGGTGGCGCTTCTGGAAAATTTCCTCAATATTATAACGCATATTATGATTTGGTGAATGCTGGAGTGCAATTTCCTCAAAGTGCTCAAGCGGTCCAATCAAATCACGCTAGTTCACAACCTAGTAGGGCCGGTAGTGTACCAAACAGGGAGCAGGCCTCACCTAGACAAGAAGTGGTTGTACCACAAGCAGAGACAGTCCCTGAATCTAGCATCATTCAAAAGGCTGGTAACGCATTGGAAGTTTTAAAAGAAGTCCTTGATGCTGTTGATGCTCAACATCCTCAGGGAGCAAGTGATGAGTTTACCCTTGACCTTGTAGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGAGGATAGTTTCTCGAGCAATTGAATTAAACGAACAGCTTCAGAAAGTTCTTGCAAGACATGATGACCTTGTTTCTGGAAGAGCTACAAAACCTGCTAATGAACATGTTCCAAAAGTTCAACCAAGACGCGATGACGTTGTATCTAGCAGAGCCACAACAACTGCTAATGAACAGTTTCCGAAAGTTCTACCAAGACGAGATGACATTGTAACTAGCAGAACCACAACAACTGCTAATGAACAGTTTCCAAAAGTTCCTCCAAGACGCAATGATGTTGTATCTGGCAGAGCTACAACAACTGTTATTACTCGCTTTGACCACGATGAATCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTACGAAGATTACGCAAAGGAAAGGCTTGTGCCAGGCCTGAAGACGAAGATCTTGAAACCAACATCTCTCGCATGCGTTTGAATGGGGAGAGACTCAATCGTCCTTTAATACGGCCACTGTCCTCAGAGCCATCTCGAGAGGCTCACAGTCCTGTTCCTCCACCAGCTGTGATCCCACCTCCACGTCCAAAACAGAATGGTGAGCTTCCTCCTGTGGCAATTCCACCGCCACCTGCAAAACACATGGAGAGGGAGAGATTTTTTCAGGAAAACAAGGATGCTTCTAATATGTCTGGTCACAGGAGAGGCCTCTCTTTACATAGTCGCAATGGCAGCAGCTCTCACAGTCACACTGGAAGCTTTGATTTTAGCGACTGA 1452 0.4442 MAAELVNAATSEKLAETDWAKNIEICELVARDKRQARDVVKAIKKRLGSKHPDAQLYAVTLLEMLMNNTGEHIHEQVIDIGIIPILVKIVKKKSDLPVRERIFLLLDATQSSLGGASGKFPQYYNAYYDLVNAGVQFPQSAQAVQSNHASSQPSRAGSVPNREQASPRQEVVVPQAETVPESSIIQKAGNALEVLKEVLDAVDAQHPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLVSGRATKPANEHVPKVQPRRDDVVSSRATTTANEQFPKVLPRRDDIVTSRTTTTANEQFPKVPPRRNDVVSGRATTTVITRFDHDESEEEEEPEQLVRRLRKGKACARPEDEDLETNISRMRLNGERLNRPLIRPLSSEPSREAHSPVPPPAVIPPPRPKQNGELPPVAIPPPPAKHMERERFFQENKDASNMSGHRRGLSLHSRNGSSSHSHTGSFDFSD* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3416 483 MobiDBLite consensus disorder prediction 142 169 - -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 437 455 - -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 459 483 - -
Mtr3g3416 483 Gene3D - 2 136 IPR008942 -
Mtr3g3416 483 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 142 165 - -
Mtr3g3416 483 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Mtr3g3416 483 Gene3D - 180 272 IPR038425 -
Mtr3g3416 483 ProSiteProfiles GAT domain profile. 176 264 IPR004152 GO:0035091|GO:0043130
Mtr3g3416 483 MobiDBLite consensus disorder prediction 362 382 - -
Mtr3g3416 483 CDD VHS 2 130 - -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 399 483 - -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 362 384 - -
Mtr3g3416 483 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Mtr3g3416 483 MobiDBLite consensus disorder prediction 406 436 - -
Mtr3g3416 483 MobiDBLite consensus disorder prediction 267 292 - -
Mtr3g3416 483 PANTHER TOM1-LIKE PROTEIN 1 272 IPR044836 GO:0035091|GO:0043130|GO:0043328
Mtr3g3416 483 PANTHER TOM1-LIKE PROTEIN 302 483 IPR044836 GO:0035091|GO:0043130|GO:0043328
Mtr3g3416 483 Pfam VHS domain 5 109 IPR002014 GO:0035091|GO:0043130
Mtr3g3416 483 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 272 - -
Mtr3g3416 483 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 302 483 - -
Mtr3g3416 483 SUPERFAMILY GAT-like domain 182 266 - -
Mtr3g3416 483 Pfam GAT domain 192 265 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3416 Mtr-Chr3 48057431 48063654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3416 - - mtr:MTR_3g097280 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3416 3 48057431 48063654 Mtr3g3416 3 48057431 48063654 ECH
Mtr8g3346 8 43994717 44000795 Mtr3g3416 3 48057431 48063654 PCT