Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3113 ATGGCAAGTGGAGGAGGTTATGGAGATGCAAACCAGAGGATAGACTATGTGTTCAAGGTGGTTCTGATTGGTGATTCAGCGGTGGGAAAATCACAGATACTAGCTAGATTTTCTAGGAATGAGTTCAGTTTAGACTCAAAGTCCACCATCGGAGTTGAATTTCAGACAAGGACTTTGGTCATCGATCATAAGACTGTTAAGGCTCAGATCTGGGATACTGCTGGTCAAGAACGATACAGAGCAGTTACAAGTGCATACTACAGGGGTGCTGTAGGTGCAATGTTGGTTTATGATATCACAAAGCGTCAGACCTTTGATCATATACCTCGCTGGCTAGAAGAACTTCGTAACCATGCTGACAAGAATATAGTCATCATTCTTGTAGGGAACAAGAGTGATCTTGAGAACCAGCGCGATGTGCCCACAGAGGATGCAAAAGAGTTTGCTGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCAGCATTGCAAGCAACTAATGTTGAAGCATCCTTTATGACAGTTTTGACAGAAATCTACAACATTGTCAACAAGAAGAACCTAGCTGCTGATGAAAGTCAGGGAAATGGGAACTCAGCATCTTTATTGGGCCAGAAAATTATTATCCCAGGTCCTGCACAGGAAATCCCTGCTAAGAGCAATATGTGTTGCCAGTCCTAA 678 0.4277 MASGGGYGDANQRIDYVFKVVLIGDSAVGKSQILARFSRNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILVGNKSDLENQRDVPTEDAKEFAEKEGLFFLETSALQATNVEASFMTVLTEIYNIVNKKNLAADESQGNGNSASLLGQKIIIPGPAQEIPAKSNMCCQS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3113 225 SMART ran_sub_2 23 221 - -
Mtr8g3113 225 PRINTS Transforming protein P21 ras signature 18 39 - -
Mtr8g3113 225 PRINTS Transforming protein P21 ras signature 41 57 - -
Mtr8g3113 225 PRINTS Transforming protein P21 ras signature 59 81 - -
Mtr8g3113 225 PRINTS Transforming protein P21 ras signature 121 134 - -
Mtr8g3113 225 PRINTS Transforming protein P21 ras signature 156 178 - -
Mtr8g3113 225 ProSiteProfiles small GTPase Ras family profile. 10 208 IPR001806 GO:0003924|GO:0005525
Mtr8g3113 225 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 224 - -
Mtr8g3113 225 SMART rab_sub_5 18 181 - -
Mtr8g3113 225 SMART ras_sub_4 15 181 - -
Mtr8g3113 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Mtr8g3113 225 Pfam Ras family 19 179 IPR001806 GO:0003924|GO:0005525
Mtr8g3113 225 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Mtr8g3113 225 ProSiteProfiles small GTPase Rho family profile. 11 189 - -
Mtr8g3113 225 SMART arf_sub_2 3 191 - -
Mtr8g3113 225 PANTHER - 1 224 - -
Mtr8g3113 225 ProSiteProfiles small GTPase Rab1 family profile. 13 223 - -
Mtr8g3113 225 Gene3D - 10 207 IPR027417 -
Mtr8g3113 225 CDD Rab11_like 15 179 - -
Mtr8g3113 225 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3113 Mtr-Chr8 41725149 41727862 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3113 K07904 - gmx:100780896 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3113 8 41725149 41727862 Mtr8g3113 8 41725149 41727862 ECH
Mtr8g3113 8 41725149 41727862 Mtr3g2896 3 42878627 42882158 PCT