Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2896 ATGGCGAGTGCAGGTTACGGTGATGCAAACCAGAAGATAGACTACGTCTTCAAGGTAGTTCTAATCGGTGATTCCGCTGTCGGAAAATCTCAGATACTAGCTCGGTTTGCAAGAAACGACTTTAGCATGGACTCAAAAGCTACAATTGGTGTTGAGTTTCAAACTCGTACTTTGGTTATTGAACATAAGAGTGTTAAGGCTCAGATCTGGGACACTGCTGGCCAAGAACGATATAGAGCAGTTACAAGTGCATACTACAGGGGCGCTGTTGGGGCAATGTTGGTTTATGACATTACCAAACGTCCGAGCTTCGATCACATACCTAGATGGTTAGAAGAACTGCGCAACCATGCTGACAAGAATATAGTCATCATTCTTATAGGAAACAAAAGTGATCTTGAGGAGCAGCGTGCAGTACCCACAGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGCTTATTTTTCTTAGAGACCTCTGCGCTGCAAGCAACTAATGTTGAGACGGCCTTCATGACTGTTTTGACAGAAATATTTAACATTGTCAACAAGAAGAACCTGGCTGCTGATGAGAATCAGGGAAATGGCAACTCAGCATCTCTGTCCGGCAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCTAAGAAGAGCATGTGTTGTCAGTAA 669 0.435 MASAGYGDANQKIDYVFKVVLIGDSAVGKSQILARFARNDFSMDSKATIGVEFQTRTLVIEHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHADKNIVIILIGNKSDLEEQRAVPTEDAKEFAEKEGLFFLETSALQATNVETAFMTVLTEIFNIVNKKNLAADENQGNGNSASLSGKKIIVPGPAQEIPKKSMCCQ* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2896 222 ProSiteProfiles small GTPase Rab1 family profile. 12 221 - -
Mtr3g2896 222 Gene3D - 9 221 IPR027417 -
Mtr3g2896 222 SMART arf_sub_2 2 185 - -
Mtr3g2896 222 Pfam Ras family 18 177 IPR001806 GO:0003924|GO:0005525
Mtr3g2896 222 PRINTS Transforming protein P21 ras signature 17 38 - -
Mtr3g2896 222 PRINTS Transforming protein P21 ras signature 40 56 - -
Mtr3g2896 222 PRINTS Transforming protein P21 ras signature 58 80 - -
Mtr3g2896 222 PRINTS Transforming protein P21 ras signature 120 133 - -
Mtr3g2896 222 PRINTS Transforming protein P21 ras signature 155 177 - -
Mtr3g2896 222 TIGRFAM small_GTP: small GTP-binding protein domain 16 173 IPR005225 GO:0005525
Mtr3g2896 222 ProSiteProfiles small GTPase Ras family profile. 9 222 IPR001806 GO:0003924|GO:0005525
Mtr3g2896 222 ProSiteProfiles small GTPase Rho family profile. 10 181 - -
Mtr3g2896 222 PANTHER RAB GTPASE-LIKE PROTEIN A1D 2 221 - -
Mtr3g2896 222 SMART ras_sub_4 14 180 - -
Mtr3g2896 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 186 IPR027417 -
Mtr3g2896 222 PANTHER - 2 221 - -
Mtr3g2896 222 SMART rho_sub_3 19 176 IPR001806 GO:0003924|GO:0005525
Mtr3g2896 222 SMART rab_sub_5 17 180 - -
Mtr3g2896 222 CDD Rab11_like 14 178 - -
Mtr3g2896 222 SMART ran_sub_2 22 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2896 Mtr-Chr3 42878627 42882158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2896 K07904 - gmx:100791062 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3113 8 41725149 41727862 Mtr3g2896 3 42878627 42882158 PCT