Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3112 ATGATTTGGGAAACTAAAACCCTAACCAAAAACCAAAACGCGCCACAACTCCATCATCAAACCAGAGCAACCATGGGTAGAGGAAGGTCACGAACTCAAAGAAAGGACTTTCGTCAAAACAGAGAAAACGTTTGGAAGCGTTCGAAACCAGATCCAGACCCTTCCCTATCCTCCGAAAATTCTCAAACTACTACTCATTGGACTCCTTTCTTGACTCAAAACCCTTCCTTTGATTCTTATTACAAGGAACAGTTAATTGTTGATCCGCAAGAATGGGATCGATTCATCGCAGTTCTCCGAACACCATTGCCTGCATCATTTAGAATCAATTCTAGTAGTCAATTTGCTGATGATATTCGTTCCCAATTGGAAAATGATTTTGCGCATTCGCTTCGCGCTGAGGTTGCTGAAGGGGGTGAGACAGAGGCTATTCGGCCTTTGCCTTGGTATCCCGGGAACTTTGCTTGGCATTCAAATTTTTCACGGATGCAGCTCAGGAAGAATCAACCATTAGAGAGGTTCCACGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTTAGTATGGTTCCTCCCCTATTCTTGGATGTGCATTCAGACCATTTTGTACTAGATATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTCGAGATTATACACCAATCCACAAAAGCAGGATCACTACCTGATGGAATGGTTGTAGCAAATGATCTTGATGTCAAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACTAATCACGAAGCACAACATTTCCCGGGATGCCGATTAAAAGGGAATTATGACAGAATGGAGTTAGATCACAATATTCACCAACTGTTATTTGATCGTGTTCTGTGCGATGTCCCGTGTAGTGGAGATGGTACACTTCGTAAGGCACCTGATATGTGGCGGAAATGGAATTCAGGGTTAGGACAAGGGCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAATTGGGGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAAAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGATGCGGTGAGTCTGTCAAACTTGTTGACGTGTCTAGTGAGCTGCCACAACTTATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGAGCAGTTGGTTTGTCTCTTCCAAAGATGTTCCCAAGTTTCGTAGAAGTGTGATTCTTTCCAGTATGTTTCCTTCTGGAAAAGGCTACCAGGATCTTGGTGATAGTAATTGTAATGTTGACATGGAAGACGACATTACTAGTGTGGAAAATGAAAAGGCTGAAGATGTTATCGAAGCACTAGAGAATCCTGTGATGGCGGAGTCTGCTGAGGAAGTTTCAGATTTTCCTCTGGAGCATTGCATGAGGATAATGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTGCTGCAAAAAGTTTCTCCTCTGCCAGGTAGTCTCATATCTGTTCTGGAAAAACCTAGCAAACAAAGTCTTGAGGATGCACAAGCACTGCACATCAATTCATCTGAAACTACACTTGAAGAAGTCTTCAAAGCAGTTCCAGAGGAAACTGTGAATGATAATGTATGCAATACGGATGATTTGGAAGATAGTCCTCTAACACGTGAAGAACGGAATTCTGAGGAAACTGAAGAGCCGCATAATGCACAAAACACAGCAGAGAAGGTTCCAGGTAAAAGAAAGCTACAATATCAGGGCAAATGGAGAGGTGTTGACCCTGTTGTCTTTTTTAAAGATGAAGCAATTGTTAATAGTATAAAGAATTTTTATGGAATCGACGAGGGTTTTCCATTCAATGGTCACCTTGTTACACGAAACCTTGATAACAGTAATGCAAAAAGAATTTACTATGTCTCCAAGTCAGTCAAGGATATTGTTGCGTTGAACTTCTCAGTTGGTCAGCAACTGAAAATGACCTCGGTTGGCATGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTGGCTCTTCACCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTTCCATACATAACCAAGCAAATTATACAGGCATCTCCCGAGGACTTCAGGCGTCTTCTGCAGGACAAAGATGTAAAATATTCAGATTTTGCTGATGCCGAGTTTGGTGAAAAGGCTGCAAACTTATTGCCTGGTTGTTGCGTGGTTATTATGGGTAAAGGGAATACAGTGGCAACAGAGTCCCTCAAAGTTGATGAGTCTACAATAGCCATCGGATGCTGGAGGGGTAGGGCAAGGTTGTCCGTGATGGTCTCTGCAATGGACTGCCAAGAATTGCTTGCAAGGCTTTTAATACGTCTCGGCACAGAAAATGGCTCTTCTGGGCAGGTGGACATATCCTCTAATGATGTTGGAGGTGAAGCACAGGCTGTACAGGAGTTGAACGATAAAAGTGATAATGATTTGAAAGCTGCTGTGAGTTAG 2541 0.4242 MIWETKTLTKNQNAPQLHHQTRATMGRGRSRTQRKDFRQNRENVWKRSKPDPDPSLSSENSQTTTHWTPFLTQNPSFDSYYKEQLIVDPQEWDRFIAVLRTPLPASFRINSSSQFADDIRSQLENDFAHSLRAEVAEGGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQPLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVVANDLDVKRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLKGNYDRMELDHNIHQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNSGLGQGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGESVKLVDVSSELPQLIRRPGLKRWKVYDKSSWFVSSKDVPKFRRSVILSSMFPSGKGYQDLGDSNCNVDMEDDITSVENEKAEDVIEALENPVMAESAEEVSDFPLEHCMRIMPHDQNTGAFFIAVLQKVSPLPGSLISVLEKPSKQSLEDAQALHINSSETTLEEVFKAVPEETVNDNVCNTDDLEDSPLTREERNSEETEEPHNAQNTAEKVPGKRKLQYQGKWRGVDPVVFFKDEAIVNSIKNFYGIDEGFPFNGHLVTRNLDNSNAKRIYYVSKSVKDIVALNFSVGQQLKMTSVGMKMFERQTAREGGSSPCAFRISSEGLPLILPYITKQIIQASPEDFRRLLQDKDVKYSDFADAEFGEKAANLLPGCCVVIMGKGNTVATESLKVDESTIAIGCWRGRARLSVMVSAMDCQELLARLLIRLGTENGSSGQVDISSNDVGGEAQAVQELNDKSDNDLKAAVS* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3112 846 Pfam 16S rRNA methyltransferase RsmB/F 200 385 IPR001678 GO:0008168
Mtr8g3112 846 MobiDBLite consensus disorder prediction 29 53 - -
Mtr8g3112 846 MobiDBLite consensus disorder prediction 54 69 - -
Mtr8g3112 846 MobiDBLite consensus disorder prediction 554 594 - -
Mtr8g3112 846 MobiDBLite consensus disorder prediction 1 20 - -
Mtr8g3112 846 MobiDBLite consensus disorder prediction 1 69 - -
Mtr8g3112 846 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 77 507 IPR029063 -
Mtr8g3112 846 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 26 812 IPR023267 GO:0001510
Mtr8g3112 846 MobiDBLite consensus disorder prediction 827 846 - -
Mtr8g3112 846 Gene3D Vaccinia Virus protein VP39 72 415 IPR029063 -
Mtr8g3112 846 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 95 507 IPR001678 GO:0008168
Mtr8g3112 846 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 26 812 - -
Mtr8g3112 846 MobiDBLite consensus disorder prediction 564 584 - -
Mtr8g3112 846 ProSitePatterns NOL1/NOP2/sun family signature. 299 310 IPR018314 GO:0003723|GO:0008168
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase signature 210 220 IPR023267 GO:0001510
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase signature 300 312 IPR023267 GO:0001510
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase signature 350 366 IPR023267 GO:0001510
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase signature 489 506 IPR023267 GO:0001510
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 156 177 IPR023270 GO:0016428
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 384 403 IPR023270 GO:0016428
Mtr8g3112 846 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 671 683 IPR023270 GO:0016428
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3112 Mtr-Chr8 41716863 41724741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3112 K15334 - gmx:100808859 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3112 8 41716863 41724741 Mtr8g3112 8 41716863 41724741 ECH
Mtr8g3112 8 41716863 41724741 Mtr3g2895 3 42865464 42872956 PCT