Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3088 ATGAGGGGTTTTACACTGTGCTTGGTCTCTTTCTTGGTTCTCTTTGGTTCCTGGTTTCAAAGTGTGTCATCACAAAATGTAACTAAAAGTGACATACAACAAGCTGCCTTTCCACCAAGAGGTTGGAATTCCTATGATGCCTTTTCTTGGATAATTTCTGAAGAAGAATTCTTACAAAATGCTGAATTAGTTTCTCAACGTCTCCTTGCTCACGGATATGAGTATGTTGTCGTCGATTACCTCTGGTATAGGAAGAAAGTCCCGGGTGCTCATAGTAATTCTCTTGGATTCGACGTGATCGATCAATGGGGAAGGATGGCCCCTGATCCAGTAAGGTGGCCTTCATCCAAAAGTGGGAATGGATTCACCGAAATAGCTAAGAAAGTACATAGCTTAGGTTTGAAGTTTGGAATTCATATTATGGCAGGGATTAGCACACAAGCTGTGAATGCAAACACCCCTATCCTAGATACAACAACGGGTGCTGCTTATCAAGAATCTGGTCGAGTATGGCATGCAAAAGACATAGCAATCCAAGAAAGGCGTTGTGGATGGATGACAAATGGTTTCATGAGTGTAAATACAACGTTAGGAGCCGGGAAAGCATTTTTGAGATCCCTTCATGAGCAGTATGCTGCTTGGGGTGTTGATCTTGTGAAACATGACTGTGTGTTTGGCGAGGACTTGGATTTAAATGAGATAACCTATGTATCTGAGGTTCTCAGCAAGGTTAATCGCCCCCTTTTGTATTCTCTATCTCCCGGAGTCAAGGCCACACCAGACATGGCCAAGCAAGTCAGTGGACTGGTCAACATGTATCGCATAGCAGGAGATGACTGGGATGTATGGGGAGATGTCAAGTCTCATTTTAATGTATCAAGGGACATGGCTGCAGCTAATTTGATAGGAGCAAAAGGTTTAAAAGGGAATTCATGGCCTGATTTGGATATGCTACCATTTGGATGGCTAACTGATGCAGCGGTAAATGATGGTCCACATAGATCTTGTAGGTTGACACTAGAAGAGCAAAGGACACAGATGACTTTGTGGGCTATGGCAAAGTCTCCCCTTATGTATGGAGGCGATGTGAGGAAGATCGACAATGCCACATATGAAATTATCACGAATCCTACCTTACTTGAGATTAATCATTTCAGCTCAAATAATAAGGAGTTTCCTTATGTCACGAAGAATGAAACGCGTAATCAAGTGAAAGAGATAAGATCTAAGGAAGCCCCAATACAATCAGTAGAAGGTGTATCTTCGGCTGACATCAGCTCTTGGATTGCGACGGGAAGAAAAGGAGAAGTGTATTTGGCTTTCTTCAATCTAAGTGAACAAAAGACACCAATATATGCACATAGATCAGATTTGTCTAAGGCTTTTACTGGCAAACGCATCCGTTCCTGTAAAGGTCAGGAATTATGGAGTGGAAAGTATGTTGCAACAAAGAAAGGTTCAATATCAACGGACGTGGGTGTTCATGGATGTGCACTATTTGTTCTAAATTGCAAGTAG 1518 0.4223 MRGFTLCLVSFLVLFGSWFQSVSSQNVTKSDIQQAAFPPRGWNSYDAFSWIISEEEFLQNAELVSQRLLAHGYEYVVVDYLWYRKKVPGAHSNSLGFDVIDQWGRMAPDPVRWPSSKSGNGFTEIAKKVHSLGLKFGIHIMAGISTQAVNANTPILDTTTGAAYQESGRVWHAKDIAIQERRCGWMTNGFMSVNTTLGAGKAFLRSLHEQYAAWGVDLVKHDCVFGEDLDLNEITYVSEVLSKVNRPLLYSLSPGVKATPDMAKQVSGLVNMYRIAGDDWDVWGDVKSHFNVSRDMAAANLIGAKGLKGNSWPDLDMLPFGWLTDAAVNDGPHRSCRLTLEEQRTQMTLWAMAKSPLMYGGDVRKIDNATYEIITNPTLLEINHFSSNNKEFPYVTKNETRNQVKEIRSKEAPIQSVEGVSSADISSWIATGRKGEVYLAFFNLSEQKTPIYAHRSDLSKAFTGKRIRSCKGQELWSGKYVATKKGSISTDVGVHGCALFVLNCK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3088 505 SUPERFAMILY Glycosyl hydrolase domain 421 503 - -
Mtr8g3088 505 PANTHER ALPHA-GALACTOSIDASE 3 402 - -
Mtr8g3088 505 PANTHER ALPHA-GALACTOSIDASE 417 502 - -
Mtr8g3088 505 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 402 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 417 502 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 Pfam Alpha galactosidase A 206 383 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Mtr8g3088 505 Gene3D Aldolase class I 16 385 IPR013785 -
Mtr8g3088 505 Gene3D - 418 504 IPR013780 -
Mtr8g3088 505 Pfam Alpha galactosidase C-terminal beta sandwich domain 424 502 IPR041233 -
Mtr8g3088 505 SUPERFAMILY (Trans)glycosidases 34 383 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3088 Mtr-Chr8 41447523 41450655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3088 11 405 Glycoside Hydrolase AT3G26380 67.172 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3088 - - cit:102619231 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3088 8 41447523 41450655 Mtr8g3088 8 41447523 41450655 ECH
Mtr8g3088 8 41447523 41450655 Mtr3g2873 3 42689785 42695331 PCT