Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2873 ATGAAGTGTTTATGTTTATCCATCTTTCTCTTCATTCTCCTTTCTCTCTTCTCTTTTCACGGCGTGTCATCTAAAAATGTATCTGATACTCAGAGTCACCTACAACTAGCTAGCACCCCACCAAGAGGTTGGAATTCCTATGATTGCTTTTGCTGGATAATTTCTGAACAAGAGTTCTTACAAAGTGCTCAAATAGTTTCTCAGCGGCTCCGCGATCATGGATACGAGTATGTTGTGGTGGATTATCTCTGGTATAGAAGGAAAGTTCAGGGTGCTTATCATGATTCTCTTGGATTCGATGTGATTGATGAATGGGGGAGGATGATTCCTGACCCAGAAAGGTGGCCTTCTTCACAAGATGGGAAAGGGTTCAGCGAAGTAGCTAATCGAGTGCATAACATGGGTTTAAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACGCCTATCCTAGATACAACAACGGGAAGTGCTTACAAAGAATCTGGCCGATTGTGGTATGCAAAAGACATAGGGATCCCTGAAAGGGCTTGTGGCTGGATGACTCATGGTTTCATGAGTGTAAATACTACGTTGGGTGCTGGCAAAGCCTTTTTGAGGTCCCTTTATGTGCAGTATGCTGAATGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGCGATGACTTAGATTTAAATGAAATAAGCTATGTATCAGAGGTTCTCCGGGAGTTTGATCGCCCCATTGTCTATTCTTTGTCTCCCGGAACAAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATTTATATCGTATCACAGCAGATGACTGGGATACATGGGGGGATGTTAAATCTCATTTTGATGTATCAAGGGATTTTTCAACAGCTAATATGATAGGAGCAAAAAGTTTAATGGGGAATTCATGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACTGATGGCGCGAGTTGTTGGAGTACAAATGCAGGTCCACATAGGTATAGTAACCTCAACCTATCAGAGAAGAGGACACAGATGACCCTGTGGGCAATGGCAAAGTCTCCCCTTATGTATGGGGGCGATGTACGGAAGATTGATCCCACAACATACGATCTCATCACAAATCCCACCCTTCTGGAGATTAATTTTTTTAGCTCAAATAATATGGAGTTTCCTTCTATCACAAGCTTGAAGAGTGAAGATCAGGACTATGGAAGGCAAATGAGAAGAAGCTATACAGAAACAAAAACATCATATACACATTCAATAGGCCTCACTAGCTGCACTGACTCAAAAACAAGTGGTTGGATTAGTGAAAGTCTTGACCAATATCCTGAAAGAATCTGTTGGAAATGGAATTTAGGAAACAATCATCTTCTTCCTCCCTTCTGCATGCACAAGAGAGAATTGAACTTGGCATCAGATGAAGAGAATATGCATCAAGATTATCATCATTTAGTTGCAGTCAACAAAATAAAATTTTGCTTGGATGCTTCTGCAAGACGAAAGCTTACTTCTAAAGAGTTCAGGAGAGGTACATTTTCGCCCTGCAGGTTGGATTCAAATCAGATGTGGCAGTTGAATCTTAATGGGACCCTGGTAAATAGTTATTCTGGCTTATGTGCAACAGTAAAACCTGTCAAAGCTCCTATTAGTTCTGCTGGTTTTCGCTCTTGGGTTGCAACAGGAAGAACAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAGTGATCAGAAAACGGTTATATCTGCGCAGACATCGGAACTATCTAAGGTTTTTCATGGGAGAGACTTAAGTTCTTGTAAAGGCAGTGAAGTTTGGAGTGGAAGTGACATTATAGTAACGCAGGGGACGTTATCAGCAGAAGTAGAAATGCATGGAACTGCACTATTTGTTCTCAATTGCAACTAG 1932 0.4167 MKCLCLSIFLFILLSLFSFHGVSSKNVSDTQSHLQLASTPPRGWNSYDCFCWIISEQEFLQSAQIVSQRLRDHGYEYVVVDYLWYRRKVQGAYHDSLGFDVIDEWGRMIPDPERWPSSQDGKGFSEVANRVHNMGLKFGIHVMRGISTQAVNANTPILDTTTGSAYKESGRLWYAKDIGIPERACGWMTHGFMSVNTTLGAGKAFLRSLYVQYAEWGVDFVKHDCVFGDDLDLNEISYVSEVLREFDRPIVYSLSPGTSVTPAMAKDVSGLVNLYRITADDWDTWGDVKSHFDVSRDFSTANMIGAKSLMGNSWPDLDMLPFGWLTDGASCWSTNAGPHRYSNLNLSEKRTQMTLWAMAKSPLMYGGDVRKIDPTTYDLITNPTLLEINFFSSNNMEFPSITSLKSEDQDYGRQMRRSYTETKTSYTHSIGLTSCTDSKTSGWISESLDQYPERICWKWNLGNNHLLPPFCMHKRELNLASDEENMHQDYHHLVAVNKIKFCLDASARRKLTSKEFRRGTFSPCRLDSNQMWQLNLNGTLVNSYSGLCATVKPVKAPISSAGFRSWVATGRTGEVYVAFFNLSDQKTVISAQTSELSKVFHGRDLSSCKGSEVWSGSDIIVTQGTLSAEVEMHGTALFVLNCN* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2873 643 SUPERFAMILY Glycosyl hydrolase domain 559 641 - -
Mtr3g2873 643 SUPERFAMILY (Trans)glycosidases 36 389 IPR017853 -
Mtr3g2873 643 Pfam Alpha galactosidase A 53 148 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 Pfam Alpha galactosidase A 212 389 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 Pfam Alpha galactosidase C-terminal beta sandwich domain 564 640 IPR041233 -
Mtr3g2873 643 SUPERFAMILY Ricin B-like lectins 500 555 IPR035992 -
Mtr3g2873 643 Gene3D - 556 642 IPR013780 -
Mtr3g2873 643 PRINTS Glycosyl hydrolase family 27 signature 34 53 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 PRINTS Glycosyl hydrolase family 27 signature 128 149 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 PRINTS Glycosyl hydrolase family 27 signature 347 368 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 PANTHER ALPHA-GALACTOSIDASE 3 640 - -
Mtr3g2873 643 Gene3D Aldolase class I 18 390 IPR013785 -
Mtr3g2873 643 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 3 640 IPR002241 GO:0004553|GO:0005975
Mtr3g2873 643 CDD GH27 40 389 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2873 Mtr-Chr3 42689785 42695331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2873 8 481 Glycoside Hydrolase AT3G26380 63.598 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2873 - - gmx:100777954 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3088 8 41447523 41450655 Mtr3g2873 3 42689785 42695331 PCT