Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3080 ATGCATCTAGAGCTGGATACTTTTACAGCTTTGGTTGTGGTTCTGTGTTTCCTTGCATTGATTTTCAAGGAGACGGTAATGGGAGGTAAGAGTTCAAAAGGGTCTCGGAGGAGAGATGTAAATTCATCATCACCATCAACATCATATGGCTCTGTTGGTTCTTCTTCATCTTCATGGGAAAATAACTATGGATATCCACAATCAACATATCCATACCCTCCACAGCAAAATCCATATCAAAGGCCTAATCACCGTCCCCCTACACAGGCTCCCTCTCATGATTATTCACGGCCGAATAGGAAGTTGGATAGGAGATATTCAAGGATTGCTGATGATTATCATTCTCTCGACGAGGTTACTGCTGCTCTTTCACATGCTGGCTTGGAATCATCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAATGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATCACATTGGAAATGGTCAAAATCCTTATGAACAAGCAATTGCAATTATTGGGAAAACATTAACTGCATTTGATGAGGATAATTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTGCTGCAATGGATTTGAAGAAGTTTTGTCAAAATATAGAGAGATTGTTCCATGCCTCCGACTCGCAGGACCCACCTCATTTGCTCCTATCATTGAGATGGGCATGACTATTGTTGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATTGCTGATGGACAGGTGACAAGAAGTGTTGACACAGAGAATGGCAAGCTAAGTTCTCAGGAAAAGAAGACAATTGATGCAATAGTGAAAGCCAGTGAGTATCCGCTGTCGATAGTTTTGGTTGGAGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGACGATAATATTCCAGCTCGAGCCTTCGACAATTTTCAGTTTGTGAATTTTACGGAAATAATGTCAAGGAATGTGGATTCAAACCGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAAGCAACCATAGACCACAGCATATTGGGGACACAAAGGGGATATTCACCAGACAGGGTTCCTTTACCTCCACCACAATATGATAGGGCTTCTTCTAGTAACGCAGCAATATCTTTTCGTTCAAATAGTTTTCAGCAAAGTACACATACATATGCTAGCAATGAAAATGAAATGAGCACGGAACCGTCTTCAGGTGGTTTATATGACAATAAGGTATGCCCGATTTGTCTTACTAATGCGAAGGATATGGCATTTGGCTGCGGGCATCAGACTTGTTGTGAATGTGGAGAAAGCCTTGAATTCTGCCCTATTTGCCGGAGCACAATCGATACCCGAATAAAACTTTATTAA 1428 0.4083 MHLELDTFTALVVVLCFLALIFKETVMGGKSSKGSRRRDVNSSSPSTSYGSVGSSSSSWENNYGYPQSTYPYPPQQNPYQRPNHRPPTQAPSHDYSRPNRKLDRRYSRIADDYHSLDEVTAALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAIAIIGKTLTAFDEDNLIPCFGFGDASTHDQDVFSFHSDERCCNGFEEVLSKYREIVPCLRLAGPTSFAPIIEMGMTIVEKSGGQYHVLLIIADGQVTRSVDTENGKLSSQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSRNVDSNRKETEFALAALMEIPSQYKATIDHSILGTQRGYSPDRVPLPPPQYDRASSSNAAISFRSNSFQQSTHTYASNENEMSTEPSSGGLYDNKVCPICLTNAKDMAFGCGHQTCCECGESLEFCPICRSTIDTRIKLY* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3080 475 MobiDBLite consensus disorder prediction 29 100 - -
Mtr8g3080 475 MobiDBLite consensus disorder prediction 38 70 - -
Mtr8g3080 475 Pfam Copine 155 368 IPR010734 -
Mtr8g3080 475 SUPERFAMILY RING/U-box 426 471 - -
Mtr8g3080 475 PANTHER COPINE FAMILY PROTEIN 1 27 475 - -
Mtr8g3080 475 SUPERFAMILY vWA-like 131 314 IPR036465 -
Mtr8g3080 475 Pfam Zinc finger, C3HC4 type (RING finger) 429 470 - -
Mtr8g3080 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 475 IPR013083 -
Mtr8g3080 475 SMART VWA_4 130 333 IPR002035 -
Mtr8g3080 475 MobiDBLite consensus disorder prediction 71 85 - -
Mtr8g3080 475 CDD RING-HC_RGLG_plant 431 475 IPR045317 GO:0061630|GO:0070534
Mtr8g3080 475 PANTHER RING-FINGER PROTEIN 27 475 - -
Mtr8g3080 475 ProSiteProfiles Zinc finger RING-type profile. 432 465 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3080 Mtr-Chr8 41398936 41402788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3080 K16280 - gmx:100800161 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3080 8 41398936 41402788 Mtr8g3080 8 41398936 41402788 ECH
Mtr8g3080 8 41398936 41402788 Mtr3g2868 3 42648146 42652321 PCT