Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2868 ATGCATCTTGAGCTAGAAACTTGGACAGCTTTGGTAGCAATTTTGTGTTTACTTTATTTTATTCTGAAGGAGATTGTTATGGGAGGGAATAGTTCAAAAGGGTCTCCTAGGAGAAGGCATGTTCCTTCATATGAGGCTTCAGGTTCTTCATCTTCATGGAATAATAACTATGATGGATATGGATATCCACCACATCCTCAACAGAGTCCATATCAAACACCTCAGCATCAGTTTTCATCTGCATCAGCTCCATTTTATGAGAATTCACAGCCAAAAAAGAAGTTAGATAAGAGGTATTCCAGAATTGCTGATAATTACCAATCATTGGATGAGGTTACTGCTGCTCTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGAATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGTTCATTCAATCGAAAAAGTTTACATCACATTGGAAGTGGTCAAAACCCTTATGAACAAGCAATCTCTATTATTGGGAAAACTCTATCTACTTTTGATGAAGATAACTTGATTCCATGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAGAGGTTATGCAATGGTTTTGAGGAAGTATTGGCACGATACAGAGAAATTGTTCCTCAGCTCAAACTTGCAGGACCGACTTCGTTCGCCCCTATTATTGAGATGGCCATGACTATTGTTGAACAAAGTGCTGGTCAATATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGCATTGATACAGAATATGGCAACCTAAGTCCACAGGAACAGAAGACAATAAACGCGATCGTAAAAGCCAGTGAGTATCCATTGTCAATAGTTTTGGTAGGAGTTGGAGATGGGCCGTGGGAGATGATGAAGGAATTTGATGACAACATCCCTTCTCGGGCGTTTGACAATTTTCAGTTTGTGAATTTTACAAAGATAATGTCGAAGAATGTAAATCCAAGTCGAAGAGAGACGGAGTTTGCCCTTGATGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAACTTGGCTTATTGGGTGCACGGAGGGGACATTCACCGGATAGGGTTCCTCTACCTGCTCCTCTTTATAATAGGACTTCTTCAAGCATCAGTGGAAATTCTTTTCGGGCAAACAGTTTTCAGCAGAGTATCCCTAGAGATACTGGCTATGAATATGAACGCAGTGTTCACACAGAGCCATCTACAAGCTCTTTACATGATAATAAGGTTTGCCCTATTTGTCTTACCGATGCGAAGGATATGGCCTTCGGTTGTGGACATCAGACTTGTTGTGGATGTGGAGAAGACCTCGAGTTCTGTCCCATTTGCCGGAGCACAATCACTACTAAGATAAAGCTTTACTAG 1413 0.4062 MHLELETWTALVAILCLLYFILKEIVMGGNSSKGSPRRRHVPSYEASGSSSSWNNNYDGYGYPPHPQQSPYQTPQHQFSSASAPFYENSQPKKKLDKRYSRIADNYQSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKSSFNRKSLHHIGSGQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEERLCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTIVEQSAGQYHVLLIIADGQVTRSIDTEYGNLSPQEQKTINAIVKASEYPLSIVLVGVGDGPWEMMKEFDDNIPSRAFDNFQFVNFTKIMSKNVNPSRRETEFALDALMEIPSQYKATIELGLLGARRGHSPDRVPLPAPLYNRTSSSISGNSFRANSFQQSIPRDTGYEYERSVHTEPSTSSLHDNKVCPICLTDAKDMAFGCGHQTCCGCGEDLEFCPICRSTITTKIKLY* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2868 470 CDD RING-HC_RGLG_plant 426 470 IPR045317 GO:0061630|GO:0070534
Mtr3g2868 470 MobiDBLite consensus disorder prediction 30 79 - -
Mtr3g2868 470 SUPERFAMILY vWA-like 124 307 IPR036465 -
Mtr3g2868 470 PANTHER RING-FINGER PROTEIN 27 470 - -
Mtr3g2868 470 SMART VWA_4 123 323 IPR002035 -
Mtr3g2868 470 SUPERFAMILY RING/U-box 420 466 - -
Mtr3g2868 470 Pfam Copine 148 361 IPR010734 -
Mtr3g2868 470 CDD vWA_copine_like 102 352 IPR010734 -
Mtr3g2868 470 Pfam Zinc finger, C3HC4 type (RING finger) 424 464 - -
Mtr3g2868 470 MobiDBLite consensus disorder prediction 44 62 - -
Mtr3g2868 470 ProSiteProfiles Zinc finger RING-type profile. 427 460 IPR001841 -
Mtr3g2868 470 PANTHER COPINE FAMILY PROTEIN 1 27 470 - -
Mtr3g2868 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 470 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2868 Mtr-Chr3 42648146 42652321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2868 K16280 - gmx:100798816 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3080 8 41398936 41402788 Mtr3g2868 3 42648146 42652321 PCT