Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2800 ATGACCACCACCAAACAGATGGATGTAGAGAGAAATGATCATGAAAAACTGAAGCATCTTGGGTTTGTGAGAATTGCTGCTATTCATGCTTTTGTTTGCATGTCGAGTCTGTATGACTATGCAAAACAAAACTCAGGACCTTTGAGATCTGCTGTTGGAACCGTTGAAGGTACTGTCACTACCGTTCTTGGTCCTGTTTACAACAAATTCAAGCCTCTTCCTCAAGATCTCCTTGTTTTTTTCGACAACAAGGTGGATGAAGCAACCAACAAATTTGAAGAGCATGCTCCTACTTTTGTAAAGCAAGTAGCAAATCAAGCTAAAGGTTTGATTCAAGAAGCAACACACAAAGCTGAGAAAGTAGTGAATGAGGCTCAATCTGGTGGGGCAAAAGCAGCTGCAAATTATGTAGCTACAAAATCTAAACAAATTGTGCTAACAAGTTCAGTAAAAATATGGTTAGGTCTCAACCACTATCCACCATTCCATGCAGTGGCAGAGATGGCAGTTCCAACAGCTGCACATTGGTCAGAAAAGTATAACCATGTTGTTAAGGACATTACTGGAAAGGGATACACAGTGTTTGGATATTTGCCTTTGATTCCTATTGATGAAATAGCCAAGGCATTTAAACAGGGGGAAGTTAATGTGAGTGTAGATCATGAAACATCTTCTGGTGAAGATTTTTCTGATTGA 696 0.3966 MTTTKQMDVERNDHEKLKHLGFVRIAAIHAFVCMSSLYDYAKQNSGPLRSAVGTVEGTVTTVLGPVYNKFKPLPQDLLVFFDNKVDEATNKFEEHAPTFVKQVANQAKGLIQEATHKAEKVVNEAQSGGAKAAANYVATKSKQIVLTSSVKIWLGLNHYPPFHAVAEMAVPTAAHWSEKYNHVVKDITGKGYTVFGYLPLIPIDEIAKAFKQGEVNVSVDHETSSGEDFSD* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2800 231 PANTHER RUBBER ELONGATION FACTOR-RELATED 7 224 - -
Mtr8g2800 231 Coils Coil 104 124 - -
Mtr8g2800 231 Pfam Rubber elongation factor protein (REF) 13 212 IPR008802 -
Mtr8g2800 231 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 7 224 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2800 Mtr-Chr8 38691016 38693059 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2800 - - gmx:100499806 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2800 8 38691016 38693059 Mtr8g2800 8 38691016 38693059 ECH
Mtr3g2800 3 42024154 42026326 Mtr8g2800 8 38691016 38693059 PCT