Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2800 ATGGCCACCAACGAGGTTGAGAACAAGAACAAAGAACTAAAGCGCCTTGGGTTTGTGAAGATCGCTGCTATTCATACTTATGTGTTTGTCTCATATCTGTATGAATCCGCTAAGAAGAACTCGGGACCTTTGAGATCCGCTGTTGAAACAGTGGAGGGAACCGTAACCACTGTTGTTGGTCCCGTCTACAACAAATTCAAGGACGTCCCTGATGATGTCCTTGTGTTTGTTGACAACAAGGTGGATGAAGCAACTGACAAGTTCAGTGAGCATGCTCCTCATATTGCTAAGCAGCTTACGGACAAAACCAAATATTTTATTCAGAAAGTAACACATGAAGCGGGGAAAGTTGTGAGTGTGGGTCGATCTGAAGGACCAAGAGCAGCTGTAGATTATGTTGCTTCAGAGACCAAGAATTTGCTACTAATCAATTCAGTGAAGCTGTGGACTGGACTCAACAAATTTCCACCATTCCATGCAGTGGCAGAGATAACAATTCCCACTGCTGCTCACTGGTCTGAGAAGTACAACCATGCAATCAAGGACATGGCTGGAAAGGGTTATAGTTTTGTTGGGTATTTACCTTTGATTCCTATAAATGCTATATCTAAGGCATTTAAGCAGGGAGAAGTTAAGGATAAGAAATCAGAATAA 654 0.4251 MATNEVENKNKELKRLGFVKIAAIHTYVFVSYLYESAKKNSGPLRSAVETVEGTVTTVVGPVYNKFKDVPDDVLVFVDNKVDEATDKFSEHAPHIAKQLTDKTKYFIQKVTHEAGKVVSVGRSEGPRAAVDYVASETKNLLLINSVKLWTGLNKFPPFHAVAEITIPTAAHWSEKYNHAIKDMAGKGYSFVGYLPLIPINAISKAFKQGEVKDKKSE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2800 217 Pfam Rubber elongation factor protein (REF) 8 208 IPR008802 -
Mtr3g2800 217 PANTHER RUBBER ELONGATION FACTOR-RELATED 2 217 - -
Mtr3g2800 217 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 2 217 IPR008802 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2800 Mtr-Chr3 42024154 42026326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2800 - - mtr:MTR_3g085370 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2800 3 42024154 42026326 Mtr3g2800 3 42024154 42026326 ECH
Mtr3g2800 3 42024154 42026326 Mtr8g2800 8 38691016 38693059 PCT