Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2792 ATGCCTGGTTTTGTGGCTGTCAAGAAGAGATTTTCAGAGAAGAATATGTGTTTTTCCAATATGGTGAATCAAGAGAAGCCATCTCTTTTGAAAGGTGGTCATAGTGTGAGGTCTGAGGCTGTACATGATGTTGTTGATGATGACAGCCTTATTCTTTCTGGGCTCCCTGATGATATTTCAAAGCATTGCCTTGCACTCGTGCCTCGTTCTAACTTCCTAGCTATGGGCGGCGTCTGTAAGAGATGGAAATGCTTTATTCAAAGCAAGGAATTCATAACCGTGCGAAAGTTGGCTGGGCTGCTTGAGGAATGGCTTTACATCTTAACAGCTGATAGTGAAGGAAAAGGAAGTCATTGGGAGGTTATGGATTCATTTGGTCATAACCGTCGATCTCTTCCACCAATGCCTGGTCCAAGGAAGGCTGGGTTTGGGGTTGTGGTTCTTAACGGAAAGCTTCTTGTTATGGCTGGCTATTCATCAACTGATGGAACTGTTTCTGTTTCAGCAGAGGTTTACCAATATAATTCTAACCTCGACAGTTGGACCCGATTGTCAAACATGAATGTGGCTCGGTACGACTTTGCTTGTGCAGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGATATGGAGCAGAAGGTGACAGTCTCTCCAGCGCTGAGGTTTATGATCCGGATACTGACAAGTGGACAGTGATTGAGAGCCTACGTCGTCCAAGATGGGGTTGCTTTGCCTGTGGATTAGAGGGGAAGCTCTATGTGATGGGTGGAAGGTCAAGCTTCACGATTGGAAATTCTAAGTTTGTTGATATTTACGACCCTGAGAATCATAGTTGGTGTGAGATGAAAAATGGGTGTGTTATGGTAACTGCTCATGCAGTACTAGAAAAGAAGTTGTTCTGTATGGAGTGGAAGAATCAACGGAAGTTATCGATATTCAATCCAGATGATAATTCATGGAAAACGGTACCAGTACCTCTGACAGGGAGTTCGAGTGTTGGTTTTAGATTTGGGATACTGAATGGTAAGCTTTTGCTGTTTTCACTGAAGGAAGATCCTACATATAGGACTTTGTTGTATGATCCAAATGCAGAGCCGGGGTGTGAGTGGGGAACTACTGATATAAAACCATCTGGTTTGTGCTTGTGCAGTGTAACTATCAAGGCCTGA 1167 0.4379 MPGFVAVKKRFSEKNMCFSNMVNQEKPSLLKGGHSVRSEAVHDVVDDDSLILSGLPDDISKHCLALVPRSNFLAMGGVCKRWKCFIQSKEFITVRKLAGLLEEWLYILTADSEGKGSHWEVMDSFGHNRRSLPPMPGPRKAGFGVVVLNGKLLVMAGYSSTDGTVSVSAEVYQYNSNLDSWTRLSNMNVARYDFACAEVNGLVYAVGGYGAEGDSLSSAEVYDPDTDKWTVIESLRRPRWGCFACGLEGKLYVMGGRSSFTIGNSKFVDIYDPENHSWCEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLSIFNPDDNSWKTVPVPLTGSSSVGFRFGILNGKLLLFSLKEDPTYRTLLYDPNAEPGCEWGTTDIKPSGLCLCSVTIKA* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2792 388 PANTHER KELCH REPEAT F-BOX PROTEIN 1 388 - -
Mtr8g2792 388 Gene3D - 87 384 IPR015915 GO:0005515
Mtr8g2792 388 ProSiteProfiles F-box domain profile. 49 97 IPR001810 GO:0005515
Mtr8g2792 388 SUPERFAMILY Kelch motif 102 349 IPR015915 GO:0005515
Mtr8g2792 388 Pfam Kelch motif 242 282 IPR006652 GO:0005515
Mtr8g2792 388 Pfam Kelch motif 190 235 IPR006652 GO:0005515
Mtr8g2792 388 Pfam Kelch motif 141 188 IPR006652 GO:0005515
Mtr8g2792 388 SUPERFAMILY F-box domain 52 92 IPR036047 GO:0005515
Mtr8g2792 388 Pfam F-box domain 52 91 IPR001810 GO:0005515
Mtr8g2792 388 PANTHER OS02G0202900 PROTEIN 1 388 IPR045887 -
Mtr8g2792 388 SMART kelc_smart 151 201 IPR006652 GO:0005515
Mtr8g2792 388 SMART kelc_smart 202 249 IPR006652 GO:0005515
Mtr8g2792 388 SMART kelc_smart 250 298 IPR006652 GO:0005515
Mtr8g2792 388 SMART fbox_2 55 95 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2792 Mtr-Chr8 38602454 38605034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2792 55 233 Miscellaneous Gene Families AT4G33900 26.667 7.95e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2792 - - gmx:100815474 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2792 8 38602454 38605034 Mtr8g2792 8 38602454 38605034 ECH
Mtr3g2813 3 42122919 42126148 Mtr8g2792 8 38602454 38605034 PCT