Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2469 ATGTCGTCGTTTTTTTCTTCCTTTACCTCCTCCTTATCGGAGACAAACCTAGCAACCGCAAAAACCATCCTCACCACCGCCGCCTCCATAGCCGGCACCGCCATGTTAATCCGTTCTGTCGCCAACGAGTTTCTCCCAATGGACATCCGTGACATCGTCTTCACCGGAATCAAATCCGCTTACTGTCGTTTCTCCACCAACGTAACAATGGTGATAGAAGAATTCGAAGGCCTTGACAATAACCAAATCTACTCCGCTGCAGAAACTTATCTCGGCACCATAGTTTCACCTTCAACAAAACGCTTCCGTATAAGCAAATCCGATCATCAACAAACTTTTACTCTTACAATGGAGCGTGATCAATTGGTAACTGATTATTTCAACGGCGTTAAACTGAAGTGGATTCTCTTTTCTCGCCGCGTTGAAAATCTTCGCAACAACCGTGATTTAACCGTTCCGATGAAGTCAGAAGTACGTTCATTGGAGTTAACTTTCAACAGAAAATACAAGGAGATGGTTCTAAAAAGCTACATTCCTTTTATTCTCGAAAAAGCAAGATCGAAGAAACAAGAAGTGAAAGCATTGAAGATATTCACCATTGATATACAGAATCTATATGGGAATCTTAACGACGCGTGGCTGGGGACTACGTTGGATCATCCAACGACGTTTGATACACTTGCACTTGATCGTGATTTAAAGGAGTTTGTTATGGAGGATTTGGAGAGGTTTGTTAAGAGGAAGGAGTATTATAGGCAAGTTGGGAAAGCTTGGAAGAGAGGTTACTTGTTGTATGGTCCACCTGGAACTGGGAAGAGTAGTTTGGTTGCTGCTATGGCGAATTATTTGCATTTTGATATATATGATTTGGAACTTGGTGAATTGAGTAGTAATGCGGAGTTGAGAAGGTTGTTGATTGCTATGCCGAATAGGTCTATTGTTGTTGTTGAGGATATTGATTGTACTGTTGAGTTTCAAGATCGTAGTTCACAGTCTAAATCTGGTAGATGCAACGACAAACAGGTTACACTATCAGGGCTGCTGAATTTTATTGACGGGCTTTGGTCAAGTTGTGGAGATGAGAGGATTATAGTGTTCACAACAAACCACAAGGAAAAGCTTGATCCAGCTTTGTTGCGCCCTGGTCGCATGGATGTTCATATCCACATGTCCTATTGTACTCCCTTTGGTTTTAGACAGTTAGCTTTCCGTTACCTTGGAATTAAAGAACACACCCTGTTCGGAGAGATTGAGGAAACAATTCAGCAAACACCGGTAACTCCTGCTGAAGTGGCAGAGCAGCTTCTCAAGGGGAGTGAAACTGAAACTACTCTTAAAGGTCTGTCAGATTTTCTTACAAAGAAGAGAGTAACTCGGGAACTTGAGGCTAAAAAGAGAGAACAAGAAGAGCAGCATAGGGATCAGCTGGTAGATGACAGTGATTTTGAAGGAGAGAATGTTCGGCATTTCGGTCCTCAGAATTGTAATGGTCGAGCAATTTAG 1503 0.4232 MSSFFSSFTSSLSETNLATAKTILTTAASIAGTAMLIRSVANEFLPMDIRDIVFTGIKSAYCRFSTNVTMVIEEFEGLDNNQIYSAAETYLGTIVSPSTKRFRISKSDHQQTFTLTMERDQLVTDYFNGVKLKWILFSRRVENLRNNRDLTVPMKSEVRSLELTFNRKYKEMVLKSYIPFILEKARSKKQEVKALKIFTIDIQNLYGNLNDAWLGTTLDHPTTFDTLALDRDLKEFVMEDLERFVKRKEYYRQVGKAWKRGYLLYGPPGTGKSSLVAAMANYLHFDIYDLELGELSSNAELRRLLIAMPNRSIVVVEDIDCTVEFQDRSSQSKSGRCNDKQVTLSGLLNFIDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDVHIHMSYCTPFGFRQLAFRYLGIKEHTLFGEIEETIQQTPVTPAEVAEQLLKGSETETTLKGLSDFLTKKRVTRELEAKKREQEEQHRDQLVDDSDFEGENVRHFGPQNCNGRAI* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2469 500 MobiDBLite consensus disorder prediction 462 500 - -
Mtr8g2469 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 435 IPR027417 -
Mtr8g2469 500 Gene3D - 389 460 - -
Mtr8g2469 500 Coils Coil 454 474 - -
Mtr8g2469 500 PANTHER BCS1 AAA-TYPE ATPASE 14 467 - -
Mtr8g2469 500 Pfam Domain associated at C-terminal with AAA 45 137 IPR025753 -
Mtr8g2469 500 SMART AAA_5 258 394 IPR003593 -
Mtr8g2469 500 CDD AAA 259 392 - -
Mtr8g2469 500 Pfam ATPase family associated with various cellular activities (AAA) 263 391 IPR003959 GO:0005524|GO:0016887
Mtr8g2469 500 MobiDBLite consensus disorder prediction 462 486 - -
Mtr8g2469 500 Gene3D - 215 388 IPR027417 -
Mtr8g2469 500 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Mtr8g2469 500 PANTHER PROTEIN HYPER-SENSITIVITY-RELATED 4-LIKE 14 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2469 Mtr-Chr8 35109493 35112456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2469 222 385 Miscellaneous Gene Families AT3G47060 30.814 1.61e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2469 - K08900 gmx:100788420 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0819 5 8063137 8066960 Mtr8g2469 8 35109493 35112456 ECH
Mtr8g2469 8 35109493 35112456 Mtr8g2469 8 35109493 35112456 ECH