Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2403 ATGTCTATGTTCTCATATCACAAACATTCTTCTAACCGTTTCTTCATTTTCCTACTTATCCTAGCTTTCAAAGGGGTAACAATTTCAGCAACAACATTCACATTCGTGAACAAATGTGACCACACAATATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTTTTGAACTCAAAAAAGGAAATACACAAACCTTCCAAGCACTAGCCGGTTGGTCAGGTAGATTCTGGGCAAGAACCGGTTGCAAATTCGACGATTCTGGTCACGGAACTTGCTCAACCGGTGACTGTGGTTCCGGAGAAATTAACTGCAATGGTAACGGTGCAACACCACCGGCAACATTAGCAGAATTCACTCTAGGAAATAGTTCGCCAGATTACTATGACGTTAGTCTCGTAGACGGTTACAATCTTCCGGTGATGGTTGAAACTAGTGGCGGTTCAGGTTCATGTCAGGCCACTGGATGTGGAGAGGATCTTAACCGGAGGTGTCCCTCGGAGCTGAGAGTGGACGGTGGTGACGCGTGTAATAGCGCGTGTGGCGCGTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTGGTTCGCCATCGAGTTGTTCGCCTTCGGTTTATTCGGAAATGTTTAAATCTGCTTGTCCTAAATCTTATAGCTATGCGTTTGATGATGCTACGAGTACTTTTACTTGTACTGCTGCGGATGATTATACTATCACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAGTCATTGATGGAGTCAAAGCCAGGATCATCAGTAGAACAAGCTGCAGTAGCTACTAAATCTTGGATAGCAAATTTGGCTACAGGAGCTTCCACAAGAATAAGCCAACCATTTTCAACTTCCATGTCTATATTTTTTGTTGCTATCACTTTCATATTTTCATATTTAGTCAATTAG 927 0.4347 MSMFSYHKHSSNRFFIFLLILAFKGVTISATTFTFVNKCDHTIWPGILGKPDLGTTGFELKKGNTQTFQALAGWSGRFWARTGCKFDDSGHGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCQATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFGSPSSCSPSVYSEMFKSACPKSYSYAFDDATSTFTCTAADDYTITFCPSSSPSLKSLMESKPGSSVEQAAVATKSWIANLATGASTRISQPFSTSMSIFFVAITFIFSYLVN* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2403 308 Pfam Thaumatin family 37 244 IPR001938 -
Mtr8g2403 308 CDD TLP-PA 32 243 - -
Mtr8g2403 308 SMART tha2 33 244 IPR001938 -
Mtr8g2403 308 PIRSF PR5 1 295 IPR001938 -
Mtr8g2403 308 PANTHER OS03G0233200 PROTEIN 3 268 IPR001938 -
Mtr8g2403 308 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 3 268 - -
Mtr8g2403 308 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Mtr8g2403 308 SUPERFAMILY Osmotin, thaumatin-like protein 31 245 IPR037176 -
Mtr8g2403 308 Gene3D Thaumatin 31 244 IPR037176 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Mtr8g2403 308 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Mtr8g2403 308 ProSiteProfiles Thaumatin family profile. 30 244 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2403 Mtr-Chr8 34402767 34405170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2403 15 285 Receptor kinase-like Gene Family AT5G38280 42.049 8.37e-73 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2403 - - gmx:100808342 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2403 8 34402767 34405170 Mtr8g2403 8 34402767 34405170 ECH
Mtr5g0886 5 8829722 8831494 Mtr8g2403 8 34402767 34405170 ECH