Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0886 ATGCAGCTTCTACCATTCAGATTCCCCCCACCACTCCCTCCTAATCCTCCTCCTCTTCACTCTTTCTCTCCTCAGAAAAAGAGTGATAATATATACTATACTATATCATATAATTATTATATAATACTATTAGTACAAACACTTGGTAAAGCAAATATTCTTATTTCATTTCAAGTGTCTTCACCAATATTCTATATGGCTCTATTATCACATAACCAACATTATCCTCAGCCCTTCTTATGCGTCATACTCTTCCTCATTTTCAAAGGGGTTTTAGTTTCAGGGGCAACATTTACATTTATGAACAAGTGTGATTACACAGTATGGCCAGGAATTTATGGAAGACCGGAACTTGGAACTACTGGTTTCGAGCTCGCAAAAGGAACTTCCAGAACCTTCCAAGCACCAACCGGATGGTCAGGTAGATTCTGGGGAAGAACCGGCTGCCAATTCGATGACTCCGGCCACGGAACTTGCTCAACTGCAGATTGCGGCTCTGGAGAAATTGCTTGCAACGGTGCAACAGCCTCACCGCCGGCAACATTAGCTGAATTCACATTAGGAACTGGCTCAATGGACTTCTACGATGTAAGCCTTGTAGACGGTTACAATCTCCCGATGTTAGTTGCCACGAGTGGCGGTACAGGGCCGTGTGACGTTACAGGTTGCAGTTCCGATCTTAATAAGAAATGTCCGTCCGAGTTGAGGGTGGATGACGGTGGTGCGTGTAATAGTGCTTGTGGCGCGTTTGGGAAACCGGAATATTGTTGTAACGGCGCGTTTAGTAACCCTGACACGTGTAAACCTTCCGTGTATTCACAAATGTTCAAATCTGAGTGTCCTAAAGCTTATAGTTACGCTTATGATGATAAAACTAGCACTTTTACTTGTTCTGGTGCTGATTATACAATCACATTTTGTCCCTTTTCACCAAGTCTAAAGTCAGCAGCCGATTCATCTACTAAAAATCCGAATGAAACGGATAGTTCTGCTTCGGGAGCCGACCCGAATCAATCAGAAATGGCTTCAGCTTCATATCTAGCTGATATGGCTATAGCTTCGGGAGCTTCTACTAGAAGCATAACTTCAATGGTTTCTTTGTTGTTGGTGGTGGTTGGTTTCATTTTTACTATTTTTTATGTTTAG 1146 0.4258 MQLLPFRFPPPLPPNPPPLHSFSPQKKSDNIYYTISYNYYIILLVQTLGKANILISFQVSSPIFYMALLSHNQHYPQPFLCVILFLIFKGVLVSGATFTFMNKCDYTVWPGIYGRPELGTTGFELAKGTSRTFQAPTGWSGRFWGRTGCQFDDSGHGTCSTADCGSGEIACNGATASPPATLAEFTLGTGSMDFYDVSLVDGYNLPMLVATSGGTGPCDVTGCSSDLNKKCPSELRVDDGGACNSACGAFGKPEYCCNGAFSNPDTCKPSVYSQMFKSECPKAYSYAYDDKTSTFTCSGADYTITFCPFSPSLKSAADSSTKNPNETDSSASGADPNQSEMASASYLADMAIASGASTRSITSMVSLLLVVVGFIFTIFYV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0886 381 Gene3D Thaumatin 96 308 IPR037176 -
Mtr5g0886 381 MobiDBLite consensus disorder prediction 317 338 - -
Mtr5g0886 381 ProSiteProfiles Thaumatin family profile. 95 308 IPR001938 -
Mtr5g0886 381 MobiDBLite consensus disorder prediction 1 23 - -
Mtr5g0886 381 PANTHER OS03G0233200 PROTEIN 87 326 IPR001938 -
Mtr5g0886 381 CDD TLP-PA 97 307 - -
Mtr5g0886 381 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 87 326 - -
Mtr5g0886 381 SMART tha2 98 308 IPR001938 -
Mtr5g0886 381 MobiDBLite consensus disorder prediction 1 21 - -
Mtr5g0886 381 SUPERFAMILY Osmotin, thaumatin-like protein 96 308 IPR037176 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 97 109 IPR001938 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 121 130 IPR001938 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 142 153 IPR001938 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 155 184 IPR001938 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 193 209 IPR001938 -
Mtr5g0886 381 PRINTS Pathogenesis-related protein signature 298 307 IPR001938 -
Mtr5g0886 381 ProSitePatterns Thaumatin family signature. 155 171 IPR017949 -
Mtr5g0886 381 Pfam Thaumatin family 102 308 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0886 Mtr-Chr5 8829722 8831494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0886 77 330 Receptor kinase-like Gene Family AT5G38280 46.296 3.57e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0886 - - gmx:100815652 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0886 5 8829722 8831494 Mtr5g0886 5 8829722 8831494 ECH
Mtr5g0886 5 8829722 8831494 Mtr8g2403 8 34402767 34405170 ECH