Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2396 ATGGTGCTCGAGGCGACACTTATCATTATGGATAACTCTGAACATATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAATCTGACACTGTTAGTCTTATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTATGACTATGGCTGGGAAGGGAGTTCGAGTTTTGTCTACCCCTACCAGTGATTTGGGCAAAATCTTGGGTTGTATGCATGGTCTAGAAATAGGCGGTGAGATAAACCTAGCTGCTGCCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAGCAGCAAAGGATTGTCGTCTTTTGTGGAAGTCCTGTCAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTTGGAGAAGAAGATGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTACAGCTGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCCGGTCCAAATGCTCTGTCGGATGTACTTATAAGTACACCTATTTTTACTGGTGATGGAGAAGGTGGAAGCGGTTTTGCAGCTGCTGCAGCAGCAGCATCTGCAGGTGGTGTATCTGGATATGATTTTGGTGTGGATCCAAACTTGGACCCTGAATTAGCTCTTGCTCTGAGAGTTTCAATGGAAGAGGAGAGAGCCAGGCAGGAAGCAGCTGCGAAAAAGGCTGCAGAGGATGCTTCCAAACAGGAGAAAGGTGGTGAGCAGCAAGCTACTTCCCAGGATGCAACTATGACTGAGCGAACCAGTACAGAAGCTGAGCCTATGGACGATGAGAATGCTCTACTACAACAGGCCCTTGCAATGTCAATGGATGATCCTGCAGTTAACCATGATGGAAGAGATGCAGATATGTCTGAAGCAGCTACAGATGACCCTGAGTTGGCTCGAGCTCTCCAATTGTCAGTATCAGACACCACCACGGACGAAGTGACTAGATTGTTGGCGGATCAGTCTTTTGTATCTCATGTCCTTGCAACACTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCCAACGCTCATAAGAAGAATGAAGAGGAGGGACCAAATGAGGAGTAG 1170 0.4598 MVLEATLIIMDNSEHMRNGDYSPSRFQAQSDTVSLICGAKTQSNPENTVGVMTMAGKGVRVLSTPTSDLGKILGCMHGLEIGGEINLAAAIQVAQLALKHRQNKKQQQRIVVFCGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLTAVNNNDSSHMVHVPPGPNALSDVLISTPIFTGDGEGGSGFAAAAAAASAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDASKQEKGGEQQATSQDATMTERTSTEAEPMDDENALLQQALAMSMDDPAVNHDGRDADMSEAATDDPELARALQLSVSDTTTDEVTRLLADQSFVSHVLATLPGVDPNDPSVKDLLASMQNQSNAHKKNEEEGPNEE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2396 389 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Mtr8g2396 389 MobiDBLite consensus disorder prediction 259 276 - -
Mtr8g2396 389 SMART VWA_4 5 175 IPR002035 -
Mtr8g2396 389 Pfam Ubiquitin interaction motif 316 330 IPR003903 -
Mtr8g2396 389 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Mtr8g2396 389 Pfam Ubiquitin interaction motif 284 299 IPR003903 -
Mtr8g2396 389 SMART uim 284 303 IPR003903 -
Mtr8g2396 389 SMART uim 316 335 IPR003903 -
Mtr8g2396 389 SMART uim 222 241 IPR003903 -
Mtr8g2396 389 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Mtr8g2396 389 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 389 - -
Mtr8g2396 389 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 389 - -
Mtr8g2396 389 Gene3D - 220 330 - -
Mtr8g2396 389 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Mtr8g2396 389 SUPERFAMILY vWA-like 4 175 IPR036465 -
Mtr8g2396 389 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Mtr8g2396 389 Coils Coil 232 252 - -
Mtr8g2396 389 MobiDBLite consensus disorder prediction 354 389 - -
Mtr8g2396 389 MobiDBLite consensus disorder prediction 241 283 - -
Mtr8g2396 389 MobiDBLite consensus disorder prediction 241 258 - -
Mtr8g2396 389 CDD VWA_26S_proteasome_subunit 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2396 Mtr-Chr8 34348079 34354516 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2396 K03029 - gmx:100814594 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2396 8 34348079 34354516 Mtr8g2396 8 34348079 34354516 ECH
Mtr5g0891 5 8862931 8868992 Mtr8g2396 8 34348079 34354516 PCT