Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0891 ATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCTGAATGGATGCGTAACGGAGATTATTCTCCTTCTCGATTTCAAGCTCAAGCTGATGCTGTTAATCTCATTTGCGGTGCTAAGACTCAGTCGAATCCGGAAAATACAGTTGGAGTTCTTATAATGGCAGGAAAGGGTGTTCGTGTTTTGGTCACGCCTACTAGTGATCTAGGCAAGATATTGGCTTGCATGCATGGACTAGAAATAGGCGGTGAGATGAACCTAGCTGCTGGTATTCAGGTGGCACAATTGGCTCTTAAGCATCGTCAAAATAAAAAGCAACATCAAAGGATTATTGTCTTTGCTGGAAGTCATGTCAAGCATGAAAAGAAAATGTTGGAGATGATAGGGAGAAAGTTGAAAAAGAATAGCGTAGCGCTTGATGTAGTTAATTTTGGCGAAGAAGATGAAGCAAAGACTGAGAAGCTGGAAGCACTTGTTGCAGCTGTGAACAATAATGATACGAGCCATATCGTTCATGTTCCAGCTGGCCCAAATGCTCTGTCTGATGTACTTATAAGTACACCAATTTTCACTGGCGATGGAGAAGGTGGAAGCGGTTTTGCCGCTGCTGCAGCGGCAGCTGCAGCTGGGGGTGGAACTGGATATGATTTTGGTGTGGATCCAAACTTGGATCCTGAATTGGCTCTTGCCTTAAGAGTTTCAATGGAAGAGGAAAGAGCCAGGCAGGAAGCTGCAGCAAAAAAGGCCGCGGAGGATGCTGCCAAACAAGAGAAAGGAGGCTCACAAGATGCGACAATGACCGAGGGTGCCAGTGCATCAACTTCTGAAGCAGAGAATAAGACAACTGATTTGATGGATGATGAGAATGCCCTACTGCAGCAGGCGCTTGCAATGTCAATGGATGACCCTGCGGTTGGCCATGATGTAAGAGATACAGATATGTCAGAAGCATCTACAGATGACCCTGAGCTGGCACTAGCTCTCCAATTGTCAGTAGCGGATAGTACTGGGGATCAAGCAAGCCAGTCAGACGTGACTAGATTGTTGGCAGATCAATCCCGTGTATCTGATATTCTTGCGTCGCTTCCCGGGGTTGACATAAATGACCCTTCCATCAAAGATTTGCTGGCATCCATTCCAAATCAATCTGAGCAGCAGAAGAATGATGACAAGCCATCAAACGAGGAGAAGAAATAA 1197 0.457 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLIMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQHQRIIVFAGSHVKHEKKMLEMIGRKLKKNSVALDVVNFGEEDEAKTEKLEALVAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGGTGYDFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGSQDATMTEGASASTSEAENKTTDLMDDENALLQQALAMSMDDPAVGHDVRDTDMSEASTDDPELALALQLSVADSTGDQASQSDVTRLLADQSRVSDILASLPGVDINDPSIKDLLASIPNQSEQQKNDDKPSNEEKK* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0891 398 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Mtr5g0891 398 MobiDBLite consensus disorder prediction 242 258 - -
Mtr5g0891 398 Gene3D - 220 305 - -
Mtr5g0891 398 SMART VWA_4 2 175 IPR002035 -
Mtr5g0891 398 MobiDBLite consensus disorder prediction 242 280 - -
Mtr5g0891 398 SUPERFAMILY vWA-like 4 175 IPR036465 -
Mtr5g0891 398 Coils Coil 232 257 - -
Mtr5g0891 398 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Mtr5g0891 398 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 398 - -
Mtr5g0891 398 SMART uim 319 338 IPR003903 -
Mtr5g0891 398 SMART uim 222 241 IPR003903 -
Mtr5g0891 398 SMART uim 287 306 IPR003903 -
Mtr5g0891 398 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Mtr5g0891 398 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Mtr5g0891 398 MobiDBLite consensus disorder prediction 260 279 - -
Mtr5g0891 398 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Mtr5g0891 398 Pfam Ubiquitin interaction motif 287 302 IPR003903 -
Mtr5g0891 398 Pfam Ubiquitin interaction motif 319 334 IPR003903 -
Mtr5g0891 398 MobiDBLite consensus disorder prediction 363 398 - -
Mtr5g0891 398 CDD VWA_26S_proteasome_subunit 1 188 - -
Mtr5g0891 398 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0891 Mtr-Chr5 8862931 8868992 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0891 K03029 - gmx:100814594 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0891 5 8862931 8868992 Mtr5g0891 5 8862931 8868992 ECH
Mtr5g0891 5 8862931 8868992 Mtr8g2396 8 34348079 34354516 PCT