Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2329 ATGGCAACAAGAAGATCCATACCCCTCCTCAAACACCTCCTCTCAACCCGATCCCAATCCGAACCATTCACTATCTCAAAGCGATGCGTAACCTACATGCACCGTCCCGGCGACGGAACTCCCCGTCCCGTAACCCTAATCCCCGGCGACGGGATCGGCCCACTCGTAACCGGCGCCGTTGAGCAACTAATGGAAGCGATGCACGCGCCAGTTTACTTCGAGAAATTCGACGTACATGGTGACATGAAAGCTGTACCTACGGAAGTTCTTGAATCGATCCGTAAGAATAAGGTTTGTCTTAAAGGTGGATTGGTTACTCCTATGGGTGGTGGTGTTAGTTCGCTTAATGTTCAGTTGAGGAAAGAGCTTGATCTTTATGCTTCTCTTGTTAATTGTTTTAATCTTCCTGGGTTACCTACACGACATGATAACGTTGATATTGTAGTTATTAGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTTCCCGGTGTCGTCGAAAGTCTTAAGGTGATAACAAAGTTCTGTTCTGAGCGTATTGCTAAATATGCGTTCGAGTATGCTTACCTGAATAACAGAAAGCAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCAGATGGTTTGTTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATTAAATACAACGAAATTATTGTAGACAATTGTTGCATGCAGCTTGTTTCAAAGCCCGAGCAGTTTGATGTCATGGTTACCCCAAATCTGTATGGAAATCTAGTTGCAAATACTGCGGCAGGCATTGCTGGAGGCACTGGAGTCATGCCAGGAGGTAATGTTGGTGCTGAGCATGCTGTGTTTGAGCAGGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAAGTAGCGGCACAAAAGACAGCTAACCCAGTGGCGCTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAGTTTCCTGCATTTGCGGACCGTTTGGAAAACGCTGTTGAAAAAGTCATTCTAGAGGGCAAGTATCGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAGTTGTCGATGCAGTAATAGATGCTTTAGATTGA 1116 0.4579 MATRRSIPLLKHLLSTRSQSEPFTISKRCVTYMHRPGDGTPRPVTLIPGDGIGPLVTGAVEQLMEAMHAPVYFEKFDVHGDMKAVPTEVLESIRKNKVCLKGGLVTPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKQVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNEKVAAQKTANPVALLLSSAMMLRHLQFPAFADRLENAVEKVILEGKYRTKDLGGTSTTQEVVDAVIDALD* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2329 371 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 22 368 - -
Mtr8g2329 371 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 41 370 - -
Mtr8g2329 371 Gene3D Isopropylmalate Dehydrogenase 27 370 - -
Mtr8g2329 371 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 22 368 - -
Mtr8g2329 371 Pfam Isocitrate/isopropylmalate dehydrogenase 44 366 IPR024084 -
Mtr8g2329 371 SMART Iso_dh_2 43 366 IPR024084 -
Mtr8g2329 371 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 40 369 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2329 Mtr-Chr8 33775812 33781256 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2329 K00030 - gmx:100777867 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g2329 8 33775812 33781256 Mtr8g2329 8 33775812 33781256 ECH
Mtr5g0958 5 9450632 9454923 Mtr8g2329 8 33775812 33781256 PCT