Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0958 ATGGCGACTCGACGATCCACAAACCTCCTCAAACACCTTATCTCCACGCGCCACCACCTCACCCACCACCGCACCGTAACCTACATGCCCCGCCCCGGAGACGGAACCCCCCGCACCGTAACCCTAATCCCCGGCGATGGGATCGGCCCTCTCGTTACCGGCGCTGTTGAGCAAGTAATGGAAGCGATGCATGCGCCAGTGCTCTTCGAGAAATTCGAAGTGCATGGCAATATGAAAGCGATTCCATCTGAAGTGATGGAATCGATTAAGAAGAATAAGGTTTGTTTGAAAGGTGGATTAGCGACTCCGATGGGTGGTGGTGTTAGTTCGCTTAATTTGCAGCTGAGGAAGGAGCTTGATCTTTATGCTTCGCTTGTCAATTGTTTTAATCTGGAAGGATTGACTACTAGGCATGATAATGTTGATATTGTTGTTATTAGGGAGAATACTGAAGGGGAATATGCCGGTCTTGAACATGAGGTTGTTCCCGGCGTCGTTGAGAGTCTCAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCGTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGATAACTGTTGCATGCAGCTTGTTTCAAAACCTGAGCAGTTTGATGTCATGGTTACCCCCAATCTTTATGGAAATCTTGTTGCGAATACAGCGGCAGGCATTGCTGGAGGCACTGGTGTCATGCCGGGAGGTAATGTTGGGGCTGACCATGCTGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAAAGAAAAAGTAGTACAAGAAAAGAAAGCCAATCCTGTGGCACTCCTCCTTTCATCCGCAATGATGCTCAGACATCTCCAGTTTCCTGTATTTGCTGAACGATTGGAAAGTGCTGTGAAACGAGTCATTTTAGAGGGTAAATACAGGACAAAGGACCTTGGAGGGACAAGCACCACCCAAGAGGTTGTTGATGCAGTAATAGATGCATTGCAGTAA 1092 0.4625 MATRRSTNLLKHLISTRHHLTHHRTVTYMPRPGDGTPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVLFEKFEVHGNMKAIPSEVMESIKKNKVCLKGGLATPMGGGVSSLNLQLRKELDLYASLVNCFNLEGLTTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKEKVVQEKKANPVALLLSSAMMLRHLQFPVFAERLESAVKRVILEGKYRTKDLGGTSTTQEVVDAVIDALQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0958 363 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 16 361 - -
Mtr5g0958 363 Pfam Isocitrate/isopropylmalate dehydrogenase 39 358 IPR024084 -
Mtr5g0958 363 SMART Iso_dh_2 39 358 IPR024084 -
Mtr5g0958 363 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 37 362 - -
Mtr5g0958 363 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 36 361 IPR004434 GO:0006099
Mtr5g0958 363 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 16 361 - -
Mtr5g0958 363 Gene3D Isopropylmalate Dehydrogenase 25 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0958 Mtr-Chr5 9450632 9454923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0958 K00030 - gmx:100778831 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0958 5 9450632 9454923 Mtr8g2329 8 33775812 33781256 PCT