Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2287 ATGGACGCTCGCCGGAGACTTAAATCTCTTCCTCCACGTTCTCCCGCCGGCGGCGAAAACCTCAAAACCCAGAAGCTTAAATCTCTTCCTACCACCACCACCGGAGAAAACCTCAATTCACAGACTGTTTTTCTCTGTGTCACTAACGCTGTTTTCTTCGGTGTTTTCTTCTCCGTCGCGTATTTCCTCCTCCACCGTTGGCGTGAGAAGATCCGTACGGAAACTCCTCTTCATGTCGTCACAGTCTCAGAAACCGCCGCCATCGTTTCTCTCATAGCCTCCGCCGTTTACCTTCTAGGTTTCTTCGGTATCGGATCACGTACTTCCTTCCCGGACGATCTCTCCGATGAAGAGATTCTCGCTAAAGAAGACTCACGAAAACCAGGACCGTGTCCAGCAGCACTTGTCGACACCGACGTAAAACCACCACCAGCAACATTAACTCCAATTGTAGCTCCAGTGAAGATCTATGAAGTTGTTGCACCCGTGAATCTCACACCGGAAGACGAAGAAATTGCAAAATCAGTTGTCACCGGTTCAATTCCGTCGTATTCCTTAGAATCCAGACTAGCAGACTGTCGTAAAGCGGCGGCGATACGTCGTTCAGCGGTGCAAACGATAACTGGAAAATCTCTAGAAGGTTTACCGTTGGAAGGTTTTGATTACGATTCGATATTGGGACAGTGTTGTGAGATGCCGATAGGGTTTGTTCAAATTCCGGTTGGTGTTGCGGGTCCACTGTTGTTAGATGGAGTTGAGTACACTGTGCCCATGGCTACCACTGAAGGGTGTCTTGTTGCAAGTACTAATAGAGGGTGTAAAGCTATTCATGTTTCTGGTGGAGCTTCTTCTGTTTTGCTTAGAGATGGAATGACCAGAGCACCTGTTGTTAGGTTTTCGTCGGCCAAAAGAGCTGCTGAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATACACTTGCTGTCACTTTCAACAAATCAAGCAGATTTGCTAGATTGCAGAGCCTTCAGCCGACAATTGCTGGCAAGAATTTGTACATTCGTTTCCGTTGTAGTACTGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTTCCTGACATGGATGTCATTGGAATCTCAGGAAATTTCTGTTCCGACAAGAAAGCGGCGGCTGTAAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTGTGTGAGGCTGTTATTAAGGAAGAGGTTGTGAAGAAAGTGTTGAAGACTAGTGTGGAGGCACTGGTTGAGCTTAACATGCTTAAGAACCTAACTGGATCAGCCCTTGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAACATTGTCTCTGCTGTCTACATAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAGAGTTCTCATTGTATTACCATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGGGGAACACAACTTGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTTAAGGGCGCCAACACAGAATCTCCAGGTGCAAATGCTAGGCTATTGGCCACCATCGTAGCTGGTTCGGTACTTGCCGGCGAGCTATCACTCATGTCTGCAATTGCAGCTGGACAACTAGTTAAGAGTCACATGAAATATAACAGATCTAGCAGGGATATGTCCAAAATCGTCTCGTGA 1752 0.4686 MDARRRLKSLPPRSPAGGENLKTQKLKSLPTTTTGENLNSQTVFLCVTNAVFFGVFFSVAYFLLHRWREKIRTETPLHVVTVSETAAIVSLIASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVDTDVKPPPATLTPIVAPVKIYEVVAPVNLTPEDEEIAKSVVTGSIPSYSLESRLADCRKAAAIRRSAVQTITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIHVSGGASSVLLRDGMTRAPVVRFSSAKRAAELKFFLEDPLNFDTLAVTFNKSSRFARLQSLQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSALAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANTESPGANARLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDMSKIVS* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2287 583 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 349 363 IPR023076 GO:0004420
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 229 250 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 256 276 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 347 365 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 387 412 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 438 464 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 492 513 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 Gene3D - 290 406 IPR009023 -
Mtr8g2287 583 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 169 573 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mtr8g2287 583 MobiDBLite consensus disorder prediction 1 33 - -
Mtr8g2287 583 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 583 - -
Mtr8g2287 583 Gene3D - 240 568 IPR023074 GO:0004420
Mtr8g2287 583 CDD HMG-CoA_reductase_classI 170 573 IPR004554 GO:0004420|GO:0005515|GO:0008299
Mtr8g2287 583 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 163 562 IPR009029 GO:0015936|GO:0016616
Mtr8g2287 583 Pfam Hydroxymethylglutaryl-coenzyme A reductase 197 573 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 290 406 IPR009023 -
Mtr8g2287 583 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 504 511 IPR023076 GO:0004420
Mtr8g2287 583 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 169 573 IPR002202 GO:0004420|GO:0015936
Mtr8g2287 583 Gene3D - 165 239 IPR023282 GO:0004420
Mtr8g2287 583 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 558 571 IPR023076 GO:0004420
Mtr8g2287 583 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 583 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2287 Mtr-Chr8 33167767 33171417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2287 1 579 Lipid Metabolism Gene Families AT1G76490 70.420 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2287 K00021 - gmx:100815480 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1006 5 10065870 10069073 Mtr8g2287 8 33167767 33171417 ECH
Mtr8g2287 8 33167767 33171417 Mtr8g2287 8 33167767 33171417 ECH
Mtr5g1006 5 10065870 10069073 Mtr8g2287 8 33167767 33171417 PCT